Poka000794.1
Basic Information
- Insect
- Phortica okadai
- Gene Symbol
- -
- Assembly
- GCA_034638295.1
- Location
- CM067848.1:9557511-9563857[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-14 4.5e-11 42.6 0.0 9 70 1139 1195 1134 1200 0.91 2 2 0.35 1.1e+03 -0.4 0.0 32 58 1409 1435 1395 1460 0.86
Sequence Information
- Coding Sequence
- ATGGACGACAATAACAAAGAGTCGACGTCTGGGGACATTGAAGAAGCCGGTAAAAAGGCTGATGCTGCTGACGCTGAGCGCAACGATTTCGTTGAAAACGTCGAAAAAGCGTCGTTTGCAAAACAACAAGATAAACAGGACGAACAACTAACTGAAAAACTAAAAGAGACGACACAtgacgaagaagaaaaacctaAATTGGACAAAAcaacgaaatcattaaaggaCTACAATGAACGTGATGGTTGCAGTCCGTCGTCTCATAGAAACGATGCATCAAAGAGCAGTAAGCAACACACCGACAAACATCGCCGTACAAAGGACGACACACCAACcacatcatcttcatcatcaactGGTGAGCGTAATCGCAGAGAAAGACGTCCGACCGATTATCATCGCACATCGAAACATGATACGCGTAAGTTGTCGCCAAGTCCTTCACACTATAAATCTTCGCCATCAGAACATAGAGACTCATCAAGACATGGACATCACAGTCGACATGATACACACGAACATTCGTCAAGTCATCACAGACACAGCCATGGACATCATAGTCAACGCACAGATAAATATCATCACAAACAGAAGCATAGTACAAGTAGCCGTACCAGTGAACATAAATCGCATAACAGCAAACATTCATCGCCAGATGGCAATGTTGAAGAAACTGTGAAGACTAATATAGataaaacacaacacaacgtGAATAAGTCGCCAAAGACtgaaagcagcagcagcacaaccGTAGAGGTTGTTGAAAAAATGGAATTTGTTGAACAAGCCGTAAATGAAGCAAGTAGCGAATCGCTTGGTGTAAAAAGTGCTGACACAATTGATATAATTAACAAATCACCCAGCACAACAGATAAATCCTCAGAGGATTTGAATGTTATTGAGATAAgtacaacatcaacatcagatACAGCTGATGCCGAGCAACAAGACGTCACTAATGATGAAGATAAAACTATAGCCGATTCGGATAAAGAGCAGACGGATAATGATGTGAAAAATACAACAGTCTTGGAAATAAATACTGAGCAAGTTAATGCACTTAGTGATGAACCTATGTGTTCACCAAAAACAAAGGTTTCTATTGTTGATGGAAATGATATTGTGGCGCCAATAAGCAACGCATCACCAATCATAAGTAATGATCAGAGCTCAAACGAGGGCAAGCCGAACGAGACAAGCAAACGTCCACGTCAATTATCGCATGAAGAGGATAATAATGAAAGCACTAAGAATAAACGACGTCGGGAGAGTGACAGCATTAAAGATGTAACCAGTGATGAAATCGATGTGCCCATAGTGGCCACAAATGACGAAGCGAATGTTAGCTTCCCTGACAAATCAATGGACGATACCTGTGAATTAACACAGAGCGAAGACAAAGACAATAATATATCAGATGAAAATTCAAAAGCATTATTAAGTATAAGCGAAGAAACAAGCAGCTCAAGTGATTCTACTGTTGTCGAAGTAAAACCGGCAAACGAGTCGACCGAGGAAGATTTTGTGGATTTAATGGCCGATGATAGTGCAGAAGAACATGAAAGTAATGAACAACATGATGAAGaCACAGTGAACGAACAATCAGAAGATTACAGCGAGCAAGATATCTATTTGCTTGGTTATAATGAAACTGGTAATCCACACATATTTTATTCTGAAAATGATCCCTTAAGATTAAGAAAAAAGGAGAGCAGCGTTGAGGTTAAGTCACCGCCATCGTCGCCAATTGAATTTATGCCATTGCCAAGCGATGAACCAGACGTAGACAATGCTAACAATGCAGTGCAAATTGTGCAGCAGGAAAAAGAATTGGCGCTAGAAGaggagacaacaacaacaaaatcaatttcTTCTGGTATGTCACCGAATCTTGACAGTGTTAGTCAAAAGGAGGGTAGCACATCACCTGAAAGCAGCACAGCATTAGCTGTTGATTTAACAATTGATGAAACAGTTGTTGAAGGTGTCGAACAAATTGTTGAATTGCCGCAAACAATTGAATCTAATAGAattgaagcagaagaagatattgttattgaacaacaacaacaatcggcACTAAATAAAAACGCAGAAGTTGAGAAATTTGAAGAGAACATGATGATTACCGAAGCAACTGCAACGgcacaaacaaatcaaattgttaATGAAGCCAATACAAATTCGACAGCAGATTCATCTCAATTGGATAATCAAGAAGTAGCGGCCGCTGGACAAAATGATAGTGTTTTAGATGCAATGCCAACATTTAGTGAATTGCAAAATGAGGAGCAATTACGTGAATTAGGTAAAAATTATGTCTTCGCTGTGGTTAAAGGAAAATTGATTGGTTTACCGCGACTAACGCGTATTGAAATTTGGGAATGTCTACAAAATGCTGGCTTTAAATCAAATGGCATAGTGACGGAAGACGAAGAAGCCATTGATATGATTGAAGAAGATCCCAAGCTGTTGTATAAATTAATGTCAAAGAAAGATGTTGAAGCATTGAAACAAACAGCCGAGACGGTTGATGAGGCGAACACGGAGAAAAGATCAGATGAACACTattcaattatagaaaaattgcaacaattaAAGCAACAAGATGATGCTGAAGATGAAGAACAAACTAATGAAGCCGAAAATCAAACTAATGAAGTTGAAAATATTGTTGGTATTGCAACAATGCAGCAACAAAAGGAATTAGAAACTGATGAAGTACAACAAATTGAAGATTATAGCTTTCAACAGAACGAAACAACCGTTAATGACAGTAATAATGACATTGGCATTGctgatgaaaatgaatataattttgaacATTTGGCAACAAATGGCAAAGCGCCAATTACACTACGCTTATCGCCAGCGACTTTGAATCAGCTTAAACAATATCCAACatattttaaaacattaaGAAAACACAATCatgtcattgaagaagtaccaaCTGAGATTgaaacgtcaacaacaacaacagcaacaacagggGGTAATGAAAGTACAAAACGTTCAAAACGAAAGCGTCGTCATTCCGGTAAACATGGTAAACATCATCGACGCTCAAAGCGTAGCCGACATTCGACACATGAGAATGACATAAGCGCACAAACGATGCCGCATATTGTTGGCGAAGATAATAATGATAGCGATGATATTGCAATGGAGGACTCTACCAACaatattaatgaaaatgataatgaaaatttaaatgccacaACGCTTAATACAAATGAAAGTCTTTTTGTTACGCCATCGACAAGCAAATCGGCAcaaaatgttgctgctgctatgcCAGCCACGACGTCAACGAAGAAAGCAACAGCCTCGAAGCGACGCCTGTCGTTGTCGACACAGCAAAGCGTTAAAACGAAGCAAACACAATTATCGGCTAAAGATGATTTCTTTAAGAAACCATTTCAATACGGTTGGAAACGTGAACTCGTGTGGCGTTCAAATTTAGATTCAACCAGCAAAGCTGATGTCTATTTTATAGCGccgaatggcaaaaaatttcgttcaCGTTCCGATATAGCGCCCTTGCTTGAGGGCGATCTGACCATTGAGCATTTCTGTTTCATACGTGAGCCACAAGATGTTGGCGCCGAATATGAGCTTGTGCGTAATGCCAAAAGCGCCAATCGTACAACAATAACGCCGCCAACAAGCACATCTGCAGGTCTCAATAAAGATTCGCCCTTATTAGTGACCGGCAAACGTATTGTGAAACCAAAAGCGCCCAAAGGTGCTAGTCCGCCGCCTGAGGGTTGGACTGCAGTACGTGCGCTAAGAAGTAATAATGCAGCGCTGACACAAAAATTGCCATACGATAATGATAGAAGCTTTTCATATGAACGTCATACAAGCAGCGCAGCAATGCAGCAGCCAGCGCCAATAATTGCGCCGGTGCCAGCGCCTGTGGCAGCCGCTAGCATCGAATGTAAATtAcccgaaacaacaacaacaaatggcaCACATGGcaattacatatatacatcACAGAGTCAACCGGAGTCAGATCAAGGCTTTACAAGACAAAAGCCTAAACCTTGGCCAGCTTGTGATGTTGATTGTGAGCGCGGTAAAGGCGAACAGCCGCCATTGAAGTGTAAATTGTGCTTGAAACGTTTTCATTATGCTTGCGTTGGCCTAAAAGAGTCAAAGggcaaatattttatgaaatacTCACATGAAGATCCACAATTAGTGATACAAGAGGGTGCTGCATATTATTGTGTGCCATGTGCTGAACGTTTTGGCTGTACCAGAAGTGTTACCGAAATTCCAGAAACTGAAACAAATGATGCCAATGCGTTGTATgcgcatacacatacacaacaaATTGTCGTCATCGGTGGcaagaaatatatattaaatagtCGGCCGCCGGAGCCGACTGAAGCGCACATTCAaaTGCCAACTGAAGCGCGAGCCGATCTGAAACGTTTACAAAAGACAATAATATTTCAACATAGAGGTAAAGTAATGCCAGAATTAGCAAATACAcccaatgatgatgatgagcatgatggtgatgatgcgGTTTCGATTGcatctacaacaaaaacaataacaggaCAGCCAGCACAAAGAAAAGACTTTATGGAAAATCTGACAATTGGCTATAATTTACTTGTGCTTATAATGCAAAAATTACCGTTACAGGATTGTCTACGTGCTGGACTCGCTTGTCATCTCTGGCAGGCAGCCACAAATGATCGACGCGTTTGGCAGTGTgtaaaaattaatgatttaCGCATTACAAATTggcaacattttttcaatattttacgtCGTATGGGCACACGTGAATTAAGTCTAAGTGCAATGTTAAATTGTgataacgatgatgatgataatgatgatgtttgGCGTATTTTTATgcgtgaaattggcaatgtacAAACGCTGCGTAAACTTGAAATGCCACGTTGTCCGGCACGCATCATTGAGAGCATTATGCAAAGTAATCAACAATTAAATGTACTAAAAGCACAAAcgattgttgttgatgattgcCTGACGTTGAATCACATTGGCGAAATGTCAAATTTACAGAAATTGTATTTAAGTCCCATGGAAATAACAAATTTGGCTGGCGATTTTCATGGTCTACGTTTGAAGGAACTTACACAATTGTCATTgacaaatttcaataatttacatGAGAAGAAAATTTCACGTTTAAGCATGTTAATCAATTTACGTACACTTGAATTGGGTGATTGTTCGCTTATTGATGCGCAACGTTTAGCTGATGTCTTACTATCCATGGTTAATTTACGCCGTTTGCGTATAGAACTTGGCGCTGTACCGAAATCGGAATTTTGTGTACTCGAATTACTTAAAGTGTTGCAATATTTAGAGCATCTAAAACGTTTGGAACTTATCAATTTCGATGTGAAACTCGGCTTTGATAAAGCATTATCGAAATGTAAGCATTTacgtaaattattattaataccaACGTATATATTACAatcggcaacaacaaataatatcaTTATGAATGGCGTACATAGTCTGGCAACGActttacaaaattttacatgggtttttactattgaattgttacgTGTTACCGCACTTTATGTTAATGGTGATCGCACCGATGATAGTATTCCAATATTACGTCCCGTACCCGGTGATCCAGATGATCATGCTGAGATTAATGAGAGCAACGGTGgtgatggtggtggtggcgacgatgctgatgctgatgatggcaATGGCGATGGCGTAAATGAAGAACAACATGTTGCAATTGTGACATTAAAGACTGTCGaagaaattatgaaaaatcgtatgccaacaacaaattttaaaattgtaaaaatctTTTATGGCAATACATTGAAACAACAACTTGAAGATTAA
- Protein Sequence
- MDDNNKESTSGDIEEAGKKADAADAERNDFVENVEKASFAKQQDKQDEQLTEKLKETTHDEEEKPKLDKTTKSLKDYNERDGCSPSSHRNDASKSSKQHTDKHRRTKDDTPTTSSSSSTGERNRRERRPTDYHRTSKHDTRKLSPSPSHYKSSPSEHRDSSRHGHHSRHDTHEHSSSHHRHSHGHHSQRTDKYHHKQKHSTSSRTSEHKSHNSKHSSPDGNVEETVKTNIDKTQHNVNKSPKTESSSSTTVEVVEKMEFVEQAVNEASSESLGVKSADTIDIINKSPSTTDKSSEDLNVIEISTTSTSDTADAEQQDVTNDEDKTIADSDKEQTDNDVKNTTVLEINTEQVNALSDEPMCSPKTKVSIVDGNDIVAPISNASPIISNDQSSNEGKPNETSKRPRQLSHEEDNNESTKNKRRRESDSIKDVTSDEIDVPIVATNDEANVSFPDKSMDDTCELTQSEDKDNNISDENSKALLSISEETSSSSDSTVVEVKPANESTEEDFVDLMADDSAEEHESNEQHDEDTVNEQSEDYSEQDIYLLGYNETGNPHIFYSENDPLRLRKKESSVEVKSPPSSPIEFMPLPSDEPDVDNANNAVQIVQQEKELALEEETTTTKSISSGMSPNLDSVSQKEGSTSPESSTALAVDLTIDETVVEGVEQIVELPQTIESNRIEAEEDIVIEQQQQSALNKNAEVEKFEENMMITEATATAQTNQIVNEANTNSTADSSQLDNQEVAAAGQNDSVLDAMPTFSELQNEEQLRELGKNYVFAVVKGKLIGLPRLTRIEIWECLQNAGFKSNGIVTEDEEAIDMIEEDPKLLYKLMSKKDVEALKQTAETVDEANTEKRSDEHYSIIEKLQQLKQQDDAEDEEQTNEAENQTNEVENIVGIATMQQQKELETDEVQQIEDYSFQQNETTVNDSNNDIGIADENEYNFEHLATNGKAPITLRLSPATLNQLKQYPTYFKTLRKHNHVIEEVPTEIETSTTTTATTGGNESTKRSKRKRRHSGKHGKHHRRSKRSRHSTHENDISAQTMPHIVGEDNNDSDDIAMEDSTNNINENDNENLNATTLNTNESLFVTPSTSKSAQNVAAAMPATTSTKKATASKRRLSLSTQQSVKTKQTQLSAKDDFFKKPFQYGWKRELVWRSNLDSTSKADVYFIAPNGKKFRSRSDIAPLLEGDLTIEHFCFIREPQDVGAEYELVRNAKSANRTTITPPTSTSAGLNKDSPLLVTGKRIVKPKAPKGASPPPEGWTAVRALRSNNAALTQKLPYDNDRSFSYERHTSSAAMQQPAPIIAPVPAPVAAASIECKLPETTTTNGTHGNYIYTSQSQPESDQGFTRQKPKPWPACDVDCERGKGEQPPLKCKLCLKRFHYACVGLKESKGKYFMKYSHEDPQLVIQEGAAYYCVPCAERFGCTRSVTEIPETETNDANALYAHTHTQQIVVIGGKKYILNSRPPEPTEAHIQMPTEARADLKRLQKTIIFQHRGKVMPELANTPNDDDEHDGDDAVSIASTTKTITGQPAQRKDFMENLTIGYNLLVLIMQKLPLQDCLRAGLACHLWQAATNDRRVWQCVKINDLRITNWQHFFNILRRMGTRELSLSAMLNCDNDDDDNDDVWRIFMREIGNVQTLRKLEMPRCPARIIESIMQSNQQLNVLKAQTIVVDDCLTLNHIGEMSNLQKLYLSPMEITNLAGDFHGLRLKELTQLSLTNFNNLHEKKISRLSMLINLRTLELGDCSLIDAQRLADVLLSMVNLRRLRIELGAVPKSEFCVLELLKVLQYLEHLKRLELINFDVKLGFDKALSKCKHLRKLLLIPTYILQSATTNNIIMNGVHSLATTLQNFTWVFTIELLRVTALYVNGDRTDDSIPILRPVPGDPDDHAEINESNGGDGGGGDDADADDGNGDGVNEEQHVAIVTLKTVEEIMKNRMPTTNFKIVKIFYGNTLKQQLED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01195991;
- 90% Identity
- iTF_01195991;
- 80% Identity
- -