Poka012250.1
Basic Information
- Insect
- Phortica okadai
- Gene Symbol
- sip1
- Assembly
- GCA_034638295.1
- Location
- CM067850.1:45597661-45600544[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.1e-94 7e-90 301.7 10.2 2 275 440 715 439 715 0.98 2 2 0.017 1.9e+02 1.8 0.0 156 192 726 761 720 772 0.75
Sequence Information
- Coding Sequence
- ATGTCTGACAACGAGTATGAACGTTTTGAAATTACGGACTATGATTTGGCGAATGAATTCAATATAAATCGGCCGCGGCGCCGGCAGACCAAGAATCATCAGATTTACGGCATTTGGGCCGACGACAGTGAGAATGAGAGCGGCGAAGAGGTTGAAGGCGGCCGGCGCGGAAGACGCGGtcttggcggcggcggtggcagcaAAAATAAAGACTACACCGCGCCAGTGAGTTTTGTTGCTGGCGGCATACAGCAGGCGGgtaagaaaaacaagaaacaagcAGAAGTCAAGGGGAATGAAAGTGGTAGCGGCTCGGCggacgatgatgataataGCCGGCCGGCGTTTGGACGCAAACAGCCGCAACTGATGGATTTAGAAGATGGCAGCAGTAATGACGATTCAGATGCAAGTGAGGATGGCAACTCAAACAAAGCTAAGCCCAAAATGGGCGCCAGCAACCGCGGCATTAGTAGCCAATTCATGCATCGCTCACACATCCCAAGCGATCGTAATGTAGGCGCCTGGGAGCAACACACGCGCGGCATTGGCGCCAAACTGCTGTTGCAGATGGGCTACGAGCCGGGCAAAGGCTTGGGCAAGGATCTGCAAGGCATATCGCAGCCAGTGCAAGCGCATGTGCGCAAAGGACGCGGCGCAATTGGCGCATATGGTCCAGAAACGGCAGCTTCGGTGGGCGGCGCAAAAACACAGAAGCCGCAAATAGATGATGATGTGCGCGAGGCAAAAGAGTTCAAGGAGCAAATGAACAAGTGGCGCAAGGGCGGCGATACGCGTGAAACTAAACAAGGCAAGAAATATTACTACAAGTCGGTCGAGGAGGTAATCGCAAAGGGCAAGAAGTCCAACTATTTGCTGGGCGAGAAGTTGAGCAAAAAACTGGGCAATGTGCCCGTGATTGATATGACGGGTCCGGAAAAACGCGTGCTGAGCGGTTACCATGCGCTCGCGCAAACCAAAATCGTCGACGATGAGGAATTGTATGATTTGTCCAGCGCCAGCATTACAACACCCACTGGAGCAGCTGTCGCAGCAAAGGCAACAGCGGCGGCAGCCAATGTCTTCGCCATGCCAGAGCTAACACACAATCTCCAGCTTATTGTAGACATGTGCGAGCAGGATATCATAGCAATTGACAAAGCGGAGCGTGAAGCCACCGATCGGCAGTCAGCGCTTGAGCATGAGTATAAGAATCTGGAGGAAGTTGTGCGTTTGGAGCGTGCACACTTGAGCACGCTCGAAGCGGCAATCGAACGCGTTGAGGAATTGTGTACTGGTGGCGACGAACTGACGCTGGCACGTGCTGAGCAGCTCTTCCACGAACTGAAGTGTAACTATGCCGCGGAGTATAAGGAATTCGGTTTGGGCGATTTGACAGCGGGCGTCATCGCGCCATTGATCAAGGAAGCGCTCGTCGGTTGGCAGCCACTCAGTCAGCCCACGCAGCACATTGATTTAATTAAGAAATGGCGTGGCATACTTGATGTCGACCAACAAGAGATTCTTACGTCGAAGACGTCGACGGATGATAAACGTAACGTCTTCGATCCTTATTCTTCGCTTGTCTGGGCTGGCGTAATACCAAGCTTTCGTGCCTGCGCCGATAATTGGAATCCCAGGCAACATCAACAAATGGCGGCGCTGCTCGATGCATGGGCGCCGCTCTTTCCCACTTGGATACTCGATTCGGTGCTAGAGCAATTGATATTGCCACGCCTAAGCGTGGGCGTGCGTGACTGGGATCCGCTAACGGACACCGTGCCCATACACATTTGGATTTTGCCCTGGCATGCCATACTCGGTGAAAAAATGGAGGAATGCATTTATCCAACCATACGTGAGAAGCTCGGCATGGCGCTGCAAGCCTGGATGCCGCAGGATCGCTCAGCGCGCGCCATGCTGACGCCATGGAAGGGCGCCTTCAGCGATGGCGAAATGCAGTTCTTTCTCATACGGCACATTATACCCAAATTGCAGTTGGCGCTCTCGGAATTTATTGTCAATCCGCTGCATCAAGAGTTGGAGCTCTGGAATCAAGTGTGGGAGTGGCATGAACTCATACCGCCCATGCTGATGGCTCAAATGCTTGACAAATACTTCTTTCCACGTTGGATGCAAGTGCTTGTACTCTGGCTGAATCAAGCGCCCGACTACACAGAGATTTCGCGCTGGTATACCAGCTGGAAGAATATGCTGAGCGAAGAAGTGTTGCGCGAACCAAACATTAAAGAGCACTTGCGTCGCGCGCTCGAAATGATGCATCGTGCCACGGATGCCGTGCCCACAACAACGCCCATGAGCAGTGCAgcgccaccgccgccacaaccgccgccgccgctgctcaTGGACATGACACAAATAGTCGCTGCGACTACGCCTGTGCAGCTTGAATTCAAGGAGTTGGTCTCACAGAAATGCGCTGAGCTCGGCGTGCTCTTTGCGCCGCTGCCCGGACGCCGTGAGCTGGGCAAGCAGATTTATCGCGTTGGCAAACTCTACTGTTACATCGATCGCAATGTTTGTATGCTCAGCGATGTCAGCTTGAAGAATTGGCAGCCAGCCTCCTTAGGCCAACTGCTCGAACATGCACAAACTGGCATCATGCACTGA
- Protein Sequence
- MSDNEYERFEITDYDLANEFNINRPRRRQTKNHQIYGIWADDSENESGEEVEGGRRGRRGLGGGGGSKNKDYTAPVSFVAGGIQQAGKKNKKQAEVKGNESGSGSADDDDNSRPAFGRKQPQLMDLEDGSSNDDSDASEDGNSNKAKPKMGASNRGISSQFMHRSHIPSDRNVGAWEQHTRGIGAKLLLQMGYEPGKGLGKDLQGISQPVQAHVRKGRGAIGAYGPETAASVGGAKTQKPQIDDDVREAKEFKEQMNKWRKGGDTRETKQGKKYYYKSVEEVIAKGKKSNYLLGEKLSKKLGNVPVIDMTGPEKRVLSGYHALAQTKIVDDEELYDLSSASITTPTGAAVAAKATAAAANVFAMPELTHNLQLIVDMCEQDIIAIDKAEREATDRQSALEHEYKNLEEVVRLERAHLSTLEAAIERVEELCTGGDELTLARAEQLFHELKCNYAAEYKEFGLGDLTAGVIAPLIKEALVGWQPLSQPTQHIDLIKKWRGILDVDQQEILTSKTSTDDKRNVFDPYSSLVWAGVIPSFRACADNWNPRQHQQMAALLDAWAPLFPTWILDSVLEQLILPRLSVGVRDWDPLTDTVPIHIWILPWHAILGEKMEECIYPTIREKLGMALQAWMPQDRSARAMLTPWKGAFSDGEMQFFLIRHIIPKLQLALSEFIVNPLHQELELWNQVWEWHELIPPMLMAQMLDKYFFPRWMQVLVLWLNQAPDYTEISRWYTSWKNMLSEEVLREPNIKEHLRRALEMMHRATDAVPTTTPMSSAAPPPPQPPPPLLMDMTQIVAATTPVQLEFKELVSQKCAELGVLFAPLPGRRELGKQIYRVGKLYCYIDRNVCMLSDVSLKNWQPASLGQLLEHAQTGIMH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01195986;
- 90% Identity
- iTF_01195986;
- 80% Identity
- -