Preg005847.1
Basic Information
- Insect
- Phormia regina
- Gene Symbol
- NFXL1
- Assembly
- GCA_001735585.1
- Location
- MINJ01166784.1:16155-17435[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 3 3.7e+04 -6.9 6.4 15 19 157 161 156 161 0.82 2 10 0.083 1e+03 0.9 0.4 4 10 192 198 191 198 0.95 3 10 1.1e-08 0.00014 22.8 16.0 1 18 206 222 206 223 0.98 4 10 0.96 1.2e+04 -2.5 2.6 6 10 249 253 248 253 0.89 5 10 7.7e-05 0.95 10.6 14.1 3 19 261 278 259 278 0.90 6 10 0.72 8.9e+03 -2.1 0.9 6 10 303 307 302 307 0.86 7 10 1.9e-09 2.3e-05 25.3 13.6 1 19 313 331 313 331 0.99 8 10 1.1 1.3e+04 -2.7 0.1 13 15 347 349 346 351 0.71 9 10 0.53 6.5e+03 -1.7 0.5 1 8 356 362 355 363 0.51 10 10 4.7e-08 0.00058 20.8 10.9 1 15 366 380 366 381 0.98
Sequence Information
- Coding Sequence
- ATGCCACCAACGaagaacaaacaacaaaattcagcaaaaaatccaacagaaaaatttaatgaaactcaTGCAAGGAACATAGAAGTCGCCAAAAAACTGGttgaaaattatgtttcatCTTCGGAAGATGAGGATGAATTGGatgaaaaaacaatattaaAATCCTTATACCAGCATTACAACACCCGCAAAGAAGATGAACATCTATTGGCTAAAACAGCCGGCTTTTTAGAGAATGTTTTGCAAAGCGGAGCTGCTACGTGTCTAATCTGTATTGGAAGTATAAAACGTTCTAATGCAATATGGTCTTGCAAATATTGCTATTGTTTCTTTCATTTAAACTGTATACGAAGATGGGCTAATGACAGTATGGCTCAGGCGAAAGCTCAAACACAAAATGAACAAGGCTACTATAATCATATGGGAGAATACGTACCACCCAAAAAACCGAAAGCTCTACACTGGTGTTGTCCGCAATGTAGAAGAGAATTTCAACCTGAAGAACGGCCAACGGAATATGAGTGCTTTTGTGGCAAAGAAATAAATCCTCCCTCACAACCTTGGTTAGTGCCACATTCTTGCGGTGAAATATGTGGCAAAGCTTTACAGCCAAATTGTGGTCATAAATGTACATTGCTATGTCATCCCGGACCATGTCCACCATGTGCCCAGTATGCTGTTACCTCGTGTAAATGTGGAAAATCTCCGCCGAAATCGGTACGTTGTGCCGAAAAGCTGTGGGAGTGCCAACAGAAATGTGAATTGCTGCTACCATGTAAAGAACATATATGCAAGAAACTATGCCACAAGCAAGGACAGTGCCCACCATGCCAACAAACTAGTATGCAACCTTGTGAATGCGGTCGAGAGATTGCAAAACGTCAATGTTGTGAACTAAAATGGCACTGCAAAAAACCATGCGGAAAAACTTATTCTTGTGGTTTACACAATTGTAAAAAAGTTTGTCATTCGGGTGACTGTGGCGAGTGTCCATTAAGTTTACCACGTTCCTGTCCATGTGGTAAAACTaaaaaagtagGTCCTTGTTCGGAGGTTATAGACACTTGTGGCGATACCTGCCAAAAGGTGTTAGCTTGTGGTATACACACTTGTACGCAGCGTTGTCATAAAGGAAATTGTAACTTGGTAAGTTTATTACAAACtttgtaa
- Protein Sequence
- MPPTKNKQQNSAKNPTEKFNETHARNIEVAKKLVENYVSSSEDEDELDEKTILKSLYQHYNTRKEDEHLLAKTAGFLENVLQSGAATCLICIGSIKRSNAIWSCKYCYCFFHLNCIRRWANDSMAQAKAQTQNEQGYYNHMGEYVPPKKPKALHWCCPQCRREFQPEERPTEYECFCGKEINPPSQPWLVPHSCGEICGKALQPNCGHKCTLLCHPGPCPPCAQYAVTSCKCGKSPPKSVRCAEKLWECQQKCELLLPCKEHICKKLCHKQGQCPPCQQTSMQPCECGREIAKRQCCELKWHCKKPCGKTYSCGLHNCKKVCHSGDCGECPLSLPRSCPCGKTKKVGPCSEVIDTCGDTCQKVLACGIHTCTQRCHKGNCNLVSLLQTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00893542;
- 90% Identity
- -
- 80% Identity
- -