Lobt024449.1
Basic Information
- Insect
- Leucophora obtusa
- Gene Symbol
- nfxl1
- Assembly
- GCA_949987735.1
- Location
- OX465296.1:105926039-105927343[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 3 6.4e+04 -7.0 6.4 15 19 158 162 157 162 0.82 2 10 0.085 1.8e+03 0.8 0.4 4 10 193 199 192 199 0.95 3 10 1.1e-08 0.00024 22.8 16.0 1 18 207 223 207 224 0.98 4 10 0.98 2.1e+04 -2.6 2.6 6 10 250 254 249 254 0.89 5 10 1.5e-06 0.031 16.1 16.5 1 18 260 278 260 279 0.97 6 10 0.73 1.6e+04 -2.2 0.9 6 10 304 308 303 308 0.86 7 10 5.2e-10 1.1e-05 27.1 13.7 1 19 314 332 314 332 0.99 8 10 1.1 2.3e+04 -2.7 0.1 13 15 348 350 347 352 0.71 9 10 0.54 1.1e+04 -1.7 0.5 1 8 357 363 356 364 0.51 10 10 1.7e-06 0.037 15.8 9.2 1 16 367 382 367 386 0.88
Sequence Information
- Coding Sequence
- atgCCACCCACAAAAAATAAACAAGCAAATTTTAGCAAGAATCCAACACAAAAGTTCAATGAGGCACATGCTCGCAACATAGAAGTCGCTAAAAAGTTGGTAGAAAACTATGTCTCCTCATCCGAAGACGAAGAGGAATTGgatgaaaaaattattttaaAATCTATTTATCAACATTATAATTCGCACAAAGAAGATGAACATTTGCTGGCAAAAACTGCCGGctttttggaaaatattttacaGTCGGGTGCCGCTACATGTCTCATTTGTATTGCAAGCATAAAGAGAGCCGATGCTATTTGGTCGTGCAAACATTGCTATTGTTTTTTCCACTTGAATTGCATACGGAGATGGGCTAATGATAGCATGGCCCAGGCAAAGGCTCAAATCCAAAACGAACAGCAAGGCTATTATAATCATATGGGAGAATATGTAGCACCTAATAAAACTAAACCACTACATTGGTGTTGCCCACAATGTAGAAAAGAGTTTCAACCCGAGGAAAGACCATCAGAATATGGATGTTTTTGTGGAAAAGAAATAAATCCACCTTCACAGCCATGGTTAGTTCCTCACTCTTGTGGCGAAATATGTGGCAAAGCATTGAAGCCAAATTGTGGGCATAAATGCACTCTACTTTGTCATCCTGGACCATGTCCACCGTGTGCTCAATATACATTAACATCTTGTAAATGTGGAAAAGCTTCTAAAATATCTGTACGTTGTGCAGACAAATTCTGGGAGTGCCAGCAAAAATGTGAATTACAACTACCTTGTGGAGAACATCGCTGTAGGAAAAACTGCCATGAACCAGGACAATGCCCACCTTGTAATCAAACCAGTATGCAGGCATGTGAATGTGGAAGAGAAAGGGCTAAAAGATTTTGCTGTGAACGGGAGTGGCACTGTAAAAAACCTTGTGGAAGGGCATACGATTGTGGTTTGCACACTTGTAAAAAAGTTTGCCATTCTGGTGATTGTGGAGAGTGTCCTCTAAGTTTACCACGTTCTTGTCCATGTGgtaaaaatAAAAAAGTTGGTCCTTGTTCAGAGGTGATAGATACTTGTGGTGATACTTGTCAAAAAGTATTAGCTTGTGGAATACACACCTGCACCCAAAGATGTCATAAAGCAAATTGTAATTTGGTAAGCTGTTTTTATTTAGTACAAATTGAAATATCGTAG
- Protein Sequence
- MPPTKNKQANFSKNPTQKFNEAHARNIEVAKKLVENYVSSSEDEEELDEKIILKSIYQHYNSHKEDEHLLAKTAGFLENILQSGAATCLICIASIKRADAIWSCKHCYCFFHLNCIRRWANDSMAQAKAQIQNEQQGYYNHMGEYVAPNKTKPLHWCCPQCRKEFQPEERPSEYGCFCGKEINPPSQPWLVPHSCGEICGKALKPNCGHKCTLLCHPGPCPPCAQYTLTSCKCGKASKISVRCADKFWECQQKCELQLPCGEHRCRKNCHEPGQCPPCNQTSMQACECGRERAKRFCCEREWHCKKPCGRAYDCGLHTCKKVCHSGDCGECPLSLPRSCPCGKNKKVGPCSEVIDTCGDTCQKVLACGIHTCTQRCHKANCNLVSCFYLVQIEIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01194959;
- 90% Identity
- -
- 80% Identity
- -