Preg036090.1
Basic Information
- Insect
- Phormia regina
- Gene Symbol
- -
- Assembly
- GCA_001735585.1
- Location
- MINJ01009811.1:4993-6944[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.00067 4.9 8.3 0.0 26 49 276 299 252 301 0.91 2 4 0.004 30 5.9 0.1 20 44 443 467 436 472 0.87 3 4 0.03 2.2e+02 3.1 0.1 21 43 472 494 468 499 0.88 4 4 0.00024 1.8 9.8 0.5 21 52 500 532 495 534 0.87
Sequence Information
- Coding Sequence
- atgattaaaataaacaataaatgtcgaacttgttttaatgaaaacagTAAAGGACTACAATCCCTTACAAAAATTACCACCGATGAAAGTAATCAGCCTAAATCCTATGCTGAACTCCTTAATGAGGTGGCCAACATAAATGTATTACATGATAAATGTTCTGCGAAATTGCCTCAAGCCATCTGTGGCTGTTGTTCGAGAAAATTAAAAGCAGCCCATGCATTTGTCCAGCAGGCTCAGGAGGTAAATGAGAAACTTTACTCAATGTTGTTGGGCCAACAGGCCGATGAAGGTGAAGAAGGTAAACCATTGGATTGTTTACAAGAAGTTCAGATAGATATCAATGCTTGTGCGGAGATAAAAATGGAGCATGATGATACCAGTGATAACAGTGGAAATGCAGATGCAATGGACGAGGAAGTTTTCCTAAAGAAAggtatacaattaaaaaaggaagATGCAGAAGAAGATATTTTAGCTGAAAATTATTCGAAGAATGAAGAAAATGAAGAAGGCAATGATCTAAAAGACTCTCTAGATGTAGCATATCCCAGTATTTCCCTTACAACTAATATGTCCGATACTGAAGACAATATTCCCACAAAtgcttttttacaaaatatggaCTCCTCCGATAATAATAGCAATAATGGAATATCTTCTGCCTCAGCATCTGATGACGATGAATGgccaaataaatcaaataattccaataacaaatccccaaaaaagaaaacaacacctccaaaaaaatccaaaaaagctGTCAAAGTCGAAGAAAGTGCGGAGAAGAAACTTGAAGATGAGGATGAATGGCTACAAGTCAAATGTAATGATtgtgataaaatatttgataattcaCGTTTGCTAAAACGACATCTTCGGCTAAATCATGTACCAGATGAATTGAAAATACAATGTCTTCATTGTGAGGCAAAATTTAGTAGACGACACAATATGTATGCACATATGCGACGTATGCATAAGACAGAAAATTTGGAAGAGCTTCAGATACAACGGAAAAAATCAAATGCCGATAAACAGTATGTTTGTCAACAATGTCCACGATCTTATACCaacaaatataaactaataGCACATGTAAATAGTCATCATAATCCGGATAACAAAAATACTGCCCCCAAAGAGAAAGTGCTACAGCCTAAAAAACGTTTCCTATGTACACTCTGTGGTCTAAAGTTCGATAGCGAAGGCAACTTAAATATACACTTTAGACGACATACTGGCGAAAAACCCTATAAGTGTGAATTTTGTGATCGAGCCTATCCTAGATTGTACGATGTTCAGGTGCATCGTCGTACTCATACTGGTGAAAAGCCCTATCAATGTACCCTTTGCGAAAAGACCTTTAGACGttctaataaattgaaaattcatatgCGAACGCATACCAACGAACGTCCCTATAAGTGTACACAGTGTGAGAAAGCATTTAAACAATCAAAAGATTTGAATATACATAAACGTACACATACTGGAGAAAGACCCTATAAGTGTGCAGTATGTCAGAGTACATTTACCCAGAGTAATTCATTGAGATTACATCAAATCAAACAGCAACATTTGGAAAAACCGAATCCAGTAGATAGTTTGCCGGGCAATATATCGTATGTCTGTCAGCCTACTTAA
- Protein Sequence
- MIKINNKCRTCFNENSKGLQSLTKITTDESNQPKSYAELLNEVANINVLHDKCSAKLPQAICGCCSRKLKAAHAFVQQAQEVNEKLYSMLLGQQADEGEEGKPLDCLQEVQIDINACAEIKMEHDDTSDNSGNADAMDEEVFLKKGIQLKKEDAEEDILAENYSKNEENEEGNDLKDSLDVAYPSISLTTNMSDTEDNIPTNAFLQNMDSSDNNSNNGISSASASDDDEWPNKSNNSNNKSPKKKTTPPKKSKKAVKVEESAEKKLEDEDEWLQVKCNDCDKIFDNSRLLKRHLRLNHVPDELKIQCLHCEAKFSRRHNMYAHMRRMHKTENLEELQIQRKKSNADKQYVCQQCPRSYTNKYKLIAHVNSHHNPDNKNTAPKEKVLQPKKRFLCTLCGLKFDSEGNLNIHFRRHTGEKPYKCEFCDRAYPRLYDVQVHRRTHTGEKPYQCTLCEKTFRRSNKLKIHMRTHTNERPYKCTQCEKAFKQSKDLNIHKRTHTGERPYKCAVCQSTFTQSNSLRLHQIKQQHLEKPNPVDSLPGNISYVCQPT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00260022;
- 90% Identity
- iTF_01261222;
- 80% Identity
- iTF_01194594;