Preg027362.1
Basic Information
- Insect
- Phormia regina
- Gene Symbol
- Rfx2
- Assembly
- GCA_001735585.1
- Location
- MINJ01057256.1:572-1173[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.2e-33 5.1e-29 101.7 0.2 17 78 2 63 1 64 0.97 2 2 0.99 1.2e+04 -2.0 0.0 28 36 169 177 164 184 0.77
Sequence Information
- Coding Sequence
- GAGGGTGTAAGTCTGCCCAGATCTACTCTTTATAACCACTATATACAACACTGTAATGACAGCAAAATAGAACCGGTAAATGCTGCCAGTTTTGGCAAGCTAATAAGATCAGTATTCTCCGGCTTACGTACCCGTCGTTTGGGTACTCGAGGCAATTCGAAATATCACTATTATGGCATACGCATTAAACCGGATTCTATACTCAAACAGCAGCAAAGTCAGGAGGAAACCTCCTCATCGCCCACAAAATCATCTTCCTCTCAACAAAGCACTTCAGTGGCTAATCATCATTCGTCAAACAACATTCAAGCTTCAACATCTGGCTCCAGTCATCACAATAGCAATAAATcatctaaaaaattaatattcaaaccGGAATCGTATGCTGCTTGTGCTCAATATTTAGGTGATGGCACTGGTGCATTACCCTCCTTTCCACTCTTAGAACTAGATCATACTTATCCAGCGGATATTAGTACCCAAGATTTAGAACTATTTCGTTTAAAATATCAAGAACATTGTGAAAAGTTTTTGGATGCCATTataaatttggaatttaataCCATCGAATATTTATGGCGTGAATTTTGGTCATCATGA
- Protein Sequence
- EGVSLPRSTLYNHYIQHCNDSKIEPVNAASFGKLIRSVFSGLRTRRLGTRGNSKYHYYGIRIKPDSILKQQQSQEETSSSPTKSSSSQQSTSVANHHSSNNIQASTSGSSHHNSNKSSKKLIFKPESYAACAQYLGDGTGALPSFPLLELDHTYPADISTQDLELFRLKYQEHCEKFLDAIINLEFNTIEYLWREFWSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -