Basic Information

Insect: Phoebis sennae
Gene Symbol: RREB1
Assembly: GCA_001586405.1
Location: LQNK01000014.1:239039-243793[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.071 5 7.9 0.4 1 23 51 74 51 74 0.96

2 11 0.016 1.1 9.9 0.1 1 23 262 284 262 284 0.97

3 11 0.00086 0.061 13.9 0.4 1 23 293 315 293 315 0.99

4 11 0.00053 0.038 14.6 2.0 1 23 321 344 321 344 0.97

5 11 0.0022 0.15 12.7 1.6 1 23 691 714 691 714 0.96

6 11 0.00018 0.013 16.1 1.3 2 23 907 928 906 928 0.97

7 11 0.018 1.3 9.7 5.3 1 23 934 957 934 957 0.97

8 11 0.034 2.4 8.9 0.8 1 23 986 1010 986 1010 0.91

9 11 0.059 4.2 8.1 0.2 1 23 1031 1054 1031 1054 0.90

10 11 0.016 1.2 9.9 0.3 2 23 1094 1115 1093 1115 0.92

11 11 0.02 1.4 9.6 5.3 1 23 1121 1143 1121 1143 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.071	5	7.9	0.4	1	23	51	74	51	74	0.96
2	11	0.016	1.1	9.9	0.1	1	23	262	284	262	284	0.97
3	11	0.00086	0.061	13.9	0.4	1	23	293	315	293	315	0.99
4	11	0.00053	0.038	14.6	2.0	1	23	321	344	321	344	0.97
5	11	0.0022	0.15	12.7	1.6	1	23	691	714	691	714	0.96
6	11	0.00018	0.013	16.1	1.3	2	23	907	928	906	928	0.97
7	11	0.018	1.3	9.7	5.3	1	23	934	957	934	957	0.97
8	11	0.034	2.4	8.9	0.8	1	23	986	1010	986	1010	0.91
9	11	0.059	4.2	8.1	0.2	1	23	1031	1054	1031	1054	0.90
10	11	0.016	1.2	9.9	0.3	2	23	1094	1115	1093	1115	0.92
11	11	0.02	1.4	9.6	5.3	1	23	1121	1143	1121	1143	0.97

Sequence Information

Coding Sequence: ATGAAGATCGAAACGCGAGCGAATAGAACCACCAGTATTGACAGCGATAATCGCTCAGATCGAAGCGATGAGGAGGAATGCCGGAGGGCGAGAAAGAGAGCAGCATCTACCTCACCATCACCCATCCCCTTAGATAAGAGAACGGCGCGCTTCGAGTGTCCAAAATGTCTTCAACGTTTTGACTCTCTGAACGCCTTTGACATCCACCGATTCACCGCACATGGTGATGAAACAAAAACAAACTATGAAGACTTCTCCTTTTCAGACTTTTCAAATAAAAAATTCACAGATATCACCAGGAACCTCGGTGATCGCAATCAAATGCCTATCAATGATCAGCTGTATAGATGTGAGTTTTGTTCGAGAGATTTCCCTTGCATACAAGTCTTGGAAATCCACAGAAAAACATGTGCAGTGACTAGAGTTCCTAGTCCTGAACGTGATCGTAGAGAAGACTTTTTCGCAAAATTGGATTTGCGAAATAGATCATTTGGAATTCCTGGAACCTTAACGCCACCAATGGAAAGGTTCACTCCCAAATTCGATGATGCACATTTGGGTAATGGTATAAGACACATCGACGCTGCCAGAGATTTGGCAGACATTCAGTCAATTTTAAATGTAACATCTGCTGGAAGTCTTTTAGAAAGGTTAACGGGCACGAGGGTCGCTTTAGAAAGTTCCGTTTTAACACCGCCTGATACTATTGTGAAAGAAAGAGAACAGGAAGAGACTCAAGATAATTTTGCTGCTGAGTTTAGACGCATGAAACTACGAGGAGAATTCCCTTGTCGATTATGCCCAGCTAAATTTCCTAATCTCAGGGCACTGAAGGGACATAATAGAGTCCATCTAAGTGGAACAGGACCTGGCCCTTATCAGTGTAACATGTGCCCTCATGCATCTCTTGACAAAGCAGCTTTAGTTCGCCACATGCGTACACATAACGGTGACAGACCATATGAATGCGCTGTTTGTAACTACGCTTTTACAACTAAAGCTAATTGTGAAAGGCATTTGAGAAACCGTCATGCCAAAGTGACACGTGAAGATGTAAAGCGGTCCATTATATACCACCCTTCAGAAGACCCTAATAACGATGAAGTTAACTCTAAACTTGCGCGAGATGAAGTAAAGAGATCCTTAGCATTCCATACTCCCGATCTTGAGAGACGAAATGACTCTGGACGAGACACGCCGTTAACACATTATTCTCCCACATATATTACCGATAGACACCCAGTGACATCATTGGTCAAGGCTCTACCTGAAACTCCTACTTTAACTCCGAGAGAATCTGAACAAACAATGCCAAGAATCAAAGTGAAAGGCATCGGACAGCTGACACAAATACCTGAATTCAGGACACCAGATATCACGTTTAAAGCAAATGATACGCCATCAGAGACGTACAACGAAGAGGCTCCAGTAGACCTCAGCACGAGTGATAATAATAGTTGTGACGTTCTTGACCTGAGTAAGAAGAAACGTGACGTGGAAGAAGACGAACCAAAAGTTCAAACACGTCCACCGTTTGATACTTCTGCAACGGCAGCCGCTACTGCAGCAGCGTTTGAAAAGACAAGGTTTCTTCTTGCCCAGCAAAGACTTTTTGAAAATTCACTTCCAAAACTAGACCCAGCATACTACGCCACACAGCTTTCTCAATTATACGCTGGTGCCGTACCTGGCCTACCTGGCTTACCTATACCACCATCTTTTCCTATCAACCCTTACTTTCTACAATCTTCCTTTTTTCCCCACCCAACTGATTCGCAGGAACTCGCCGAAATAAAACAACGCATTCAAAAAGAAATCATACGTGGCTTAAGTATGTCTGGTGGAAGAATAATATCGAATGAGCAAGAGACTCAACCCAAGCAGGAACCAGAAGACGAGGAGCAGAAACCTTTGCAGGTGGCAACATCACCAACACCTCCACCACACTCTGAATCTCCGCATCCAATATCGAACAACATCGTACAGCAAAATGACTCTGTGAAGATGGTAATAAAGAACGGTGTATTGATGCCAAAACAAAAACAGAGGAGGTATCGTACTGAGCGTCCATTTTCATGCTCGCAATGTTCAGCTCGTTTCACATTGCGTTCAAACATGGAACGGCATGTGAAGCAACAACATCCACAGCATTGGAGTGTGAGAAGACCAGCGCCGAGAGCGCCCCCACCGTATCCTGGATCTGAAAATTTGGCAGATCGTGTGAAATATGCTTTATTAGCGCGCCATCTTGAACGGCCCTCGCAGCTTGATCGCTCTCCTATAAGACGGGACTCTGATGAAGTCGCTGACAATGAAGAAGATGAAGACGATGCCTTAGTAATTGATGAAGAACCTGATGATAATAAATCTGAAGAACATACAGCTGCGCATCGAGCCGCCGCCGAGATCTTAATGGCCTCTCGTCAACAAGAAATGAACAAGGACTTCGATCTGAAAATTGCAGGAAATCTTATAAACAAACCGATACCCATCAATAACGAGAAATCAGATAGTGGGACTGATACCATCCCATTGAGCCAAGAATCAGCCATACCCTTGGTTCCAACCCGAAGTGATGAAGAGGAGGATGAGGAAGGTCTTGTGGCCTCAACGAGCGAGGGGAATAACTCTGGAAGCGACGAAAATAAGTCCGAATCCGACACCGGCAACCAACCACCAAAGAAGAAATCGGCTTACAGCCTAGCCCCAAACCGTGTCTCCTGTCCCTATTGCCACCGAAAATTCCCCTGGTCGTCCTCCCTTCGCCGCCACGTTCTCACCCACACTGGTCAGAAGCCCTTCAAATGTCCCCACTGTCCTCTCTTATTCACCACCAAATCCAACTGCGACCGTCATCTGTTGCGAAAACACGGCGGTTCCGCAAAAGCCATTTTAGCTGAGCCCATCCCAGACACTCTCCCTGCTGTAGACGCGCGTTCAGTCCCAGAGAGACCTTTCAAATGTGCTTCATGTCCTGCTAGTACATTTTCCTCTTTGGATACTCTAAAGAAACACATGTCCTCTCGTCATGGGGACTCCCAGCCACCTTCTCCAGTAGATATAAACGAGGAAGGCGAAAACGGCTTAGTCTTCAAGTGTCACTTATGTGAACTGTCGTTCGGCGATCGGAGCGGGGCGTTGGGCCACTTGGCGTCCGCTCACTCTGCTGAATACGAACAGTTAGTCAGCAAGGGTGCTTTGGACGCAGCGAGTGATAGAAGCGAAAGTGCGGATGACGATGAAAGAGGGAAATTCCCGGACCATGCTAATAGAAAGGTGGTTTGCGCATTCTGCATCCGTCGTTTCTGGTCTGCAGAAGACCTCCGCCGGCACATGCGGACCCACTCCGGGGAACGACCCTTCGCCTGCGACCTGTGCAGGCGACGCTTCACCCTCAAGCACAGCATGTTACGTCATCGCAAGAAGCACAGAGACGACACCCAGGTCACTGATGATGAGGAAACCACACCACCCAGCACTCCACACGTTACTAACGGATACCGTTACCAGGACGACGACGGCTCCGGCAACGAGATCCCTAGCAACATCAACAACAACAACTCACCCCCTTCCATGCCCTTCGAGAAAAAACTTCAACTGGATATGACGTCACGCAAATATTCCTCCGAAGAAAACGAAGGAGAAAATGGCGGCGACCTTATTGGGAAACTATTGGGAATTCCGGACAAAACAATCATCAATAAACTTCTCTCTTCAGCTGACGAAGCCGCGAAATTCTTAGGAGTGAATAAATGA
Protein Sequence: MKIETRANRTTSIDSDNRSDRSDEEECRRARKRAASTSPSPIPLDKRTARFECPKCLQRFDSLNAFDIHRFTAHGDETKTNYEDFSFSDFSNKKFTDITRNLGDRNQMPINDQLYRCEFCSRDFPCIQVLEIHRKTCAVTRVPSPERDRREDFFAKLDLRNRSFGIPGTLTPPMERFTPKFDDAHLGNGIRHIDAARDLADIQSILNVTSAGSLLERLTGTRVALESSVLTPPDTIVKEREQEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKLARDEVKRSLAFHTPDLERRNDSGRDTPLTHYSPTYITDRHPVTSLVKALPETPTLTPRESEQTMPRIKVKGIGQLTQIPEFRTPDITFKANDTPSETYNEEAPVDLSTSDNNSCDVLDLSKKKRDVEEDEPKVQTRPPFDTSATAAATAAAFEKTRFLLAQQRLFENSLPKLDPAYYATQLSQLYAGAVPGLPGLPIPPSFPINPYFLQSSFFPHPTDSQELAEIKQRIQKEIIRGLSMSGGRIISNEQETQPKQEPEDEEQKPLQVATSPTPPPHSESPHPISNNIVQQNDSVKMVIKNGVLMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPAPRAPPPYPGSENLADRVKYALLARHLERPSQLDRSPIRRDSDEVADNEEDEDDALVIDEEPDDNKSEEHTAAHRAAAEILMASRQQEMNKDFDLKIAGNLINKPIPINNEKSDSGTDTIPLSQESAIPLVPTRSDEEEDEEGLVASTSEGNNSGSDENKSESDTGNQPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSAKAILAEPIPDTLPAVDARSVPERPFKCASCPASTFSSLDTLKKHMSSRHGDSQPPSPVDINEEGENGLVFKCHLCELSFGDRSGALGHLASAHSAEYEQLVSKGALDAASDRSESADDDERGKFPDHANRKVVCAFCIRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHRDDTQVTDDEETTPPSTPHVTNGYRYQDDDGSGNEIPSNINNNNSPPSMPFEKKLQLDMTSRKYSSEENEGENGGDLIGKLLGIPDKTIINKLLSSADEAAKFLGVNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00961349;
90% Identity: iTF_00358016; iTF_00358974; iTF_00711275; iTF_00710504;
80% Identity: -