Basic Information

Insect: Eurema mandarina
Gene Symbol: RREB1
Assembly: GCA_018238005.1
Location: DWAJ01001985.1:1638-6341[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.081 7.1 7.9 0.4 1 23 51 74 51 74 0.96

2 12 0.015 1.3 10.2 0.4 1 21 114 134 114 135 0.95

3 12 0.018 1.6 9.9 0.1 1 23 261 283 261 283 0.97

4 12 0.00099 0.087 13.9 0.4 1 23 292 314 292 314 0.99

5 12 0.00061 0.054 14.6 2.0 1 23 320 343 320 343 0.97

6 12 0.0025 0.22 12.7 1.6 1 23 689 712 689 712 0.96

7 12 0.00021 0.018 16.1 1.3 2 23 900 921 899 921 0.97

8 12 0.021 1.8 9.7 5.3 1 23 927 950 927 950 0.97

9 12 0.13 11 7.3 0.6 1 23 979 1003 979 1003 0.92

10 12 0.081 7.1 7.9 0.1 1 20 1022 1041 1022 1045 0.82

11 12 0.0015 0.13 13.3 0.2 2 23 1085 1106 1084 1106 0.96

12 12 0.024 2.1 9.6 5.3 1 23 1112 1134 1112 1134 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.081	7.1	7.9	0.4	1	23	51	74	51	74	0.96
2	12	0.015	1.3	10.2	0.4	1	21	114	134	114	135	0.95
3	12	0.018	1.6	9.9	0.1	1	23	261	283	261	283	0.97
4	12	0.00099	0.087	13.9	0.4	1	23	292	314	292	314	0.99
5	12	0.00061	0.054	14.6	2.0	1	23	320	343	320	343	0.97
6	12	0.0025	0.22	12.7	1.6	1	23	689	712	689	712	0.96
7	12	0.00021	0.018	16.1	1.3	2	23	900	921	899	921	0.97
8	12	0.021	1.8	9.7	5.3	1	23	927	950	927	950	0.97
9	12	0.13	11	7.3	0.6	1	23	979	1003	979	1003	0.92
10	12	0.081	7.1	7.9	0.1	1	20	1022	1041	1022	1045	0.82
11	12	0.0015	0.13	13.3	0.2	2	23	1085	1106	1084	1106	0.96
12	12	0.024	2.1	9.6	5.3	1	23	1112	1134	1112	1134	0.97

Sequence Information

Coding Sequence: ATGAAGATTGAAACGCGTGCCAAGAGAACGACCAGCATCGACAGCGATAACCGTTCGGATAGGAGCGATGAAGAGGACTGCAGGAGGGCGAGAAAGCGAGCAGCATCTACCTCACCATCCCCGATACCCTTAGATAAGAGAACGGCTCGCTTCGAGTGCCCCAAATGCCTCCAAAGATTCGACTCTCTCAACGCGTTCGATATCCATCGCTTCACAGCACACGGCGATGAAACAAAATCAAACTATGATGACTATAACTTCTCAGATTTCTCATCTAAAAAGCTATCAGATATCACCCGAAATATTGGCGAACGGCCAATACCTATCAACGATCAGTTCTATAGATGTGACTTCTGTACGAGAGAGTTTACATCCTTGCAAGTTTTAGAGAATCATAGAAAAGCATGTGCTTCTACTAGACTTCCAAGTCCAGAGAGGGACCGCAGAGAAGACTTTTTCGCTAAATTAGATTTGAGAAATCGATCGTTTGGAATTGCAGGAACATTAACACCTCCTATGGAACGATTCACGCCTAAATTCGAAGATTCACACTTAGGGAACGGGATCAGGCATATTGACGCGGCGAGAGACTTGGCTGATATACAAtccattttaaatgtaaccTCTGCTGGGAGTCTTTTGGAAAGATTAACTGGCACAAGAGTAGCTATAGAAAGTGCCGTACTAACCCCACCTGATACGATAGGCAAAGACCGTGAACAAGAGGAAACCCAGGACAATTTCGCTGCTGAATTCAGACGCATGAAGCTTCGTGGAGAATTCCCATGTCGGCTGTGCCCAGCCAAATTCCCAAACCTAAGAGCTCTGAAAGGCCATAACAGAGTCCATCTTAGCGGTACTGGTCCTGGCCCATATCAATGTAACATGTGCCCGCATGCGTCTCTTGACAAAGCGGCTCTCGTTCGTCACATGCGTACCCATAACGGCGACCGACCATACGAATGCGCTGTATGTAATTATGCCTTTACAACCAAAGCTAACTGTGAACGACATTTGAGAAACAGGCACGCGAAAGTAACGCGAGAGGATGTTAAACGCTCCATCATTTATCACCCATCGGAAGATCCTAACAATGACGAAGTTAACTCTAAACTAGCGCGTGATGAAGTAAAAAGATCTCTTGCATTCCACACTCCAGACCTGGAAAGGCGCAGTGAGACCGGCCGAGATACGCCCTTAACTCACTATTCACCTACCTATATATCTGACAGGCACCCAGTAACATCTCTGGTCAAAACCCTGCCGGAAACCCCAACGCTAACACCAAGAGAATCCGAACAAACTATGCCCAGAATTAAAGTGAAAGGTATCGGACAGCTGACACAAATACCTGAATTTAGAACGCCCGAAGTCACGTTTAAATCAAATGATATTCAAACGGAGACATACAATGAAGAGGCCCCAGTTGACCTCAGTACAAGTGACAATAATAGTTGCGATGTCCTCGATCTGAGTAAGAAGAAACGAGACGTGGATGATGAAGAACCAAAAGTTCAAGCGCGCCCACCCTTCGATACAAATACCGCAGCCGCTACCGCCGCGGCATTCGAAAAAACAAGATTCCTTCTTGCCCAACAAAGGCTTTTTGAAAATTCTCTACCAAAATTAGATCCAGCATATTACGCTACACAACTCTCTCAACTTTACGCTGGAGCCGTACCTGGAATACCCGGCTTACCTTTACCCCCATCTTTTCCTATCAACCCTTACTTTCTACAATCTTCTTTCTTTCCCCACCCAACTGACACACAGGAACTTGCCGAAATAAAACAGCGTAttcataaagaaataattcgCGGCTTAAGCATGTCTGGTGGCAGGTTGGTTTCGAACGATCAAGAAACCCAGCCAAAGCAGGAGCCTGAAGACGAAGATCAAAAGCCTTTGCAAGTTACAATGTCGCCCACACCACCTCCGCATTCTGAATCTCCGCTTCCAATCCCAAATAATATAGTCTCCCAAAATGAACCCGTGAAAATGGTTATAAAGAATGGCATACTAatgcaaaaacaaaaacagagAAGATACCGTACTGAACGACCATTTTCTTGCTCGCAATGTTCAGCTCGTTTTACATTACGTTCTAATATGGAGCGTCATGTGAAGCAACAGCATCCTCAGCACTGGAGTCTTAGAAGACCGGCTCCGAGAGCGCCACCGCCGTACCCTGGTTCAGAGAATATTGCTGATCGCGTGAAATATGCGCTGCTGGCTCGACACCTGGAGCGGCCATCGCAGCTAGATCGGTCTCCTGTTAGACGAGATTCGGATGAAGTAGCTGATAATGAAGAAGATGAAGATGACGCTTTAGTTATCGACGAGGAGCCTGATGATAAATCTGAGGAGCATTCAGCTGCGCGCCGCGCGGCTGCTGAAATACTAATGGCGTCTCGTCAACAGGAACTGAACAAGGACTTTGACCTTAAAATTGCGGGAAACCTGATCAACAAACCGATACCTATTAACACTGATAAGAATGAAACTGGCGCTGAATCAAATATTGAGAGCGTGCCATTGGTTCCAACGCGAAGTGATGAAGAGGAAGACGAAGAAGGCCTGGTCGCTTCTACAAGCGAGGGCAATATCTCTGGAAGCGATGAAAATaaATCCGAATCCGATACAGGAAACCAGCCACCTAAGAAGAAATCCGCATACAGTCTAGCACCAAACCGCGTCTCCTGTCCGTACTGCCACCGAAAATTCCCCTGGTCTTCTTCCCTCCGCCGCCATGTCCTAACTCATACTGGGCAAAAACCTTTCAAATGTCCACATTGCCCACTCCTTTTTACAACTAAGTCTAACTGCGACCGTCATTTATTGAGAAAACATGGTGGGTCAGCGAAGGCTATACTAGCCGAGCCAATAGATGCCATACCTACAGTTACAGACTCACGATCAGTGCCCGAAAGACCATACAAATGCGCCTCCTGCCCTGCCAGTACCTTTTCCTCTATCGAGACCTTAAAGAAGCACATGTCTTCTCGCCATGGGGACTCTCAACCACCATCCCCAGAAGTCGAAATCGAAGAAAACGGATTGGTCTTCAAATGCCATTTGTGTGAAGCTTCGTTCAGCGATCGCACTGGTGCATTGGGACACTTGGCTGCAGCACATTCTTCGGAGTACGAGCAATTGGTCAGCAAGGGTGCGTTGGACGCTGCCAGTGATAGAAGTGAAAGCGCTGATGATGACGAGCGAGGAAAGTTCCCGGATCATGCTAATAGAAAGGTGGTTTGCGCATTCTGCGTCCGTCGCTTCTGGTCTGCAGAAGACCTCCGTCGTCACATGCGCACCCACTCCGGGGAGAGACCATTTGCCTGCGACCTCTGCCGTCGACGCTTTACCCTGAAGCACAGCATGCTGCGTCATCGCAAGAAGCATCGAGATGATACCCAAGTGACTGATGATGAGGAGACTTCACCGCCTACTACGCCGATTGCTAATGGATACCGTTATCAAGAAGACGACGGCTCCGGCAGCGAAATCCCGAACAACGTCAACAACAACAACTCCCCACCGTCCATGCCTTACGAGAAGAAACTGCAACTGGATATGACGTCACGCAAATATTCCTCCGAAGAGAACGAGGGCGAAAACGGAAGCGACCTCATTGGGAAGCTCCTAGGAATCCCGGACAAAACCATCATCAATAAACTCCTGTCATCCGCTGACGAAGCCGCCAAATTCCTGGGAGTGAACAAATGA
Protein Sequence: MKIETRAKRTTSIDSDNRSDRSDEEDCRRARKRAASTSPSPIPLDKRTARFECPKCLQRFDSLNAFDIHRFTAHGDETKSNYDDYNFSDFSSKKLSDITRNIGERPIPINDQFYRCDFCTREFTSLQVLENHRKACASTRLPSPERDRREDFFAKLDLRNRSFGIAGTLTPPMERFTPKFEDSHLGNGIRHIDAARDLADIQSILNVTSAGSLLERLTGTRVAIESAVLTPPDTIGKDREQEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKLARDEVKRSLAFHTPDLERRSETGRDTPLTHYSPTYISDRHPVTSLVKTLPETPTLTPRESEQTMPRIKVKGIGQLTQIPEFRTPEVTFKSNDIQTETYNEEAPVDLSTSDNNSCDVLDLSKKKRDVDDEEPKVQARPPFDTNTAAATAAAFEKTRFLLAQQRLFENSLPKLDPAYYATQLSQLYAGAVPGIPGLPLPPSFPINPYFLQSSFFPHPTDTQELAEIKQRIHKEIIRGLSMSGGRLVSNDQETQPKQEPEDEDQKPLQVTMSPTPPPHSESPLPIPNNIVSQNEPVKMVIKNGILMQKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSLRRPAPRAPPPYPGSENIADRVKYALLARHLERPSQLDRSPVRRDSDEVADNEEDEDDALVIDEEPDDKSEEHSAARRAAAEILMASRQQELNKDFDLKIAGNLINKPIPINTDKNETGAESNIESVPLVPTRSDEEEDEEGLVASTSEGNISGSDENKSESDTGNQPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSAKAILAEPIDAIPTVTDSRSVPERPYKCASCPASTFSSIETLKKHMSSRHGDSQPPSPEVEIEENGLVFKCHLCEASFSDRTGALGHLAAAHSSEYEQLVSKGALDAASDRSESADDDERGKFPDHANRKVVCAFCVRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHRDDTQVTDDEETSPPTTPIANGYRYQEDDGSGSEIPNNVNNNNSPPSMPYEKKLQLDMTSRKYSSEENEGENGSDLIGKLLGIPDKTIINKLLSSADEAAKFLGVNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00961349;
90% Identity: iTF_01193907;
80% Identity: -