Psen000017.1
Basic Information
- Insect
- Phoebis sennae
- Gene Symbol
- egg
- Assembly
- GCA_001586405.1
- Location
- LQNK01002555.1:41267-60856[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.4 5.5e+03 -2.8 0.0 19 40 567 588 565 597 0.77 2 3 2.1 7.9e+03 -3.3 0.0 30 38 902 910 877 911 0.81 3 3 5.7e-14 2.2e-10 40.1 0.0 4 75 943 1007 940 1009 0.90
Sequence Information
- Coding Sequence
- ATGATAGCGGAACATTCAGAAGATTCCAATACTCGTACTGAAGGTGAAACACAAAAAGATACTCAGGTAGATAAGGAAGATAAGCCCCAAGAAGTATGTGAAATAAGTAAAGATACAGAAGAATCGGAAAAGATACAAGAAGTTATTCAAAATGATGAATCCGACAAAGATAAAGCTATTGAAGGCACTGAAATGGTTGAATCAGTACAAGAAGCAACTGATATTGAGACGTTTAAACTCTCCGATACAGATACGGATGATGGTGAAAATAAAGCAAGAACAAAAACTAAAATTGAGGAAAATACAAATAAGAATGATACAGATACAAATGTTGTTGATTTAGAAGAAAGTTCCTCTGAAGAAGATGATAAACCTCAAAAGAATATAGATTCTTCTGAACCCAAAACATCAGATCAGCCAACTGAGATCGAAGGACCAACCAACGAAAATAGTTCAAGCAACGGAGAAGCAGTGAGTGATAACAAACCAACTGCTGAAACTGAAACTTCCCAAGCACCAAGTCTAGAAGTGTTCAATTTGGATTCTGATGAGGAAGAACCATCAACAATGGATGATCAAGAAATAGCTCAAGAAACAGAAGTAGTCACCGAAGCTTTGCCCGACTGCACCCGCAAAAGGAAGTGTGTAAACGAGTCGTGTCCTAACGACTCCAATACGTACTATATAGCAGATAATAGCACTGTATCCTTCTATGATGGGAAGAAGAATAGGCACTATGTATGCGAAACTTGCGCTAGTGTGGTTGCGGTGAGGAATTCGAAACTGATAGAAGGCATACATAACTTTGAAGACTTACTTGCGTTGGATCTTGGCAAAGACTGCAAGGATCCCATCGAAGTGTTGGATTCCGACTCTGATGATGAGGTGGACCCTGGGGATGAGGATCAGGAGGTGCTTGGGGAAGAGGGGGCTAAATTTATAGAGGAGAAATTAGCGGACATGTTGAATGCGACGTGGGAGAAATTCAAAATGGACTCCCGACTCAGCGACACAGTCGATGCGCTGAAAGAACAAATGGCTGAATTGGAACGTGAAGGGAAACAAGTGGACGACATGCTCAAGGAATGCCAGGTGTCCACAGACAAGTTACGTAACGAACTGTACGCGACTTTCCAACCAGAGATACTAGAGTTGACGCCTCTGTGTATCATAGACACGCCCAATTTTGCGTTTACTGCAATGGTGGACCCGCCAAGTCCATCTGAGAGTAATCGTCAATTAAAACGTCGTATGTCACCGTCGAATGAACAAGCGGCGAAACGACCGGCCATTCCTCTGGGATATACACCACTTAATGCTGAAAATGATGATTCTGCTACTGCTGAAAAAGGTGCTGCTGAAGACGATGTAAGTACTATAGTAATTGTATTTAAGGAACCATTACACTGGTCGTTAATTGGACCGATGGAGGACTCATTCGGTGTAACAACCAATGAAACTGCACCCTGCATGCAGTTGCCAACGACCCATAACACAGACATAGCGGTGGTGAAGCTGTCAGCGGAAGTGGCTCCCGCGGACCTCCCGCCTCCCGGCAACATCCTGCGCGCCTCGCTGCGCGCCGGCATGGCCGTGTACGGGAAACGGAAGGAGCTAAGGTCCTGGGGGAAGGCGACGGTCATTGAAGTGGAGGGGGCTGGGACCTCAGAGTACACTAGGTGTCGCGTCAAGTTTGACACTCAACAGCGTAGCAGCTACAAGACTCTCACTGGACAGTGCATCGCATATTTCGAGCCGGCGAACGCGAGGATGACTATAGGTACTCGAGTAATAGCGTTGTATCAAGACACAAATCTACAGGTGCTAGGGCAGAAGCAAAGCGAGTCGTTCTACGCGGGCGTGGTCGCCGAAATACCCAACCCGGTCAATAATTATAGATACCTAATATTCTTCGACCACGGCTACGCCCAATACGCGAAGCACGCTAACACGCGTCTAGTGTGCGAGTGCTCGTCGCTGGTGTGGGACGAGGTGGACTCTGTATCGAAGGACTTCATCAGAAAGTACCTGCTGGAGTACCCCGAGCGGCCCATGGACTTCATCAGGAAGTACCTGCTGGAGTATCCCGAGCGGCCCATGGTGAGGCTGCACGCGGGCCAGACGATCAAGACTGAGAAGTACCTGCTGGAGTATCCCGAGAGGCCCATGGTGAGGCTGCACGCGGGGCAGACGATCAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTCGAAGGACTTCATCAGGAAGTACGTGCTGGAGTACCCCGAGCGGCCCATGGTAAATGGTGCACATCCAAGGTGCTCAAAGTGGACGCGTCCATTGTTCTGGTGCAATTCGGCCGGGAAGCTCAGGACAGGGTGGAGTGGATATACCGCGGCTCCAACCGGCTCGCTCCACTGTTCCTGGAGCAGCAGGCTGCGGAGAGGCAGAGGCCTAGGGCTTTGCCCCGCGCTCAAGCTCACTCCAGGACCAACACACCATATGTTGAGTACACACGTTCAGACGAACAGATGAACAAACCGAATGAAGCCCAACAAAAGGAGATGATCAATGAGGAAATCCGTCGTCAACGCGCCGTAGCTAAGAAGTCTACAGCACAACCTGTACAGAACATACCGCCTGTTTCCTCTAAGCTGGAAAACTTTACCAGTCGAGTTGTGTACTATACACCAAAGAACGCAGTGCGTCCGTATCGCATATCGGGCGCGCACGTGTGTGGGCCTGGCTGTAGGAGGCGCGACGTGCTCGCTCTGAAGGACTTGAGGACGTACAATCCACTTGCGAAACCACTGCTCAGTGGGTGGGAGAGGCAAATAGTCCGCTGGAAGGGCAACAAAGCGGTAATGTACAGAGCACCCTGCGGTAGAAGATTACGCGATATGAACGAACTACACAAGTATCTACGACTAGTGGCTTCAGATATGGGCGTGGACCTGTTCGATTTCAACCCTAGTACCCACTGCTTGGCAGAGTTTGTGATTAACAAGTGTCTTATATCGAAAAAGGTGAGTCCTATGTTATCTTGA
- Protein Sequence
- MIAEHSEDSNTRTEGETQKDTQVDKEDKPQEVCEISKDTEESEKIQEVIQNDESDKDKAIEGTEMVESVQEATDIETFKLSDTDTDDGENKARTKTKIEENTNKNDTDTNVVDLEESSSEEDDKPQKNIDSSEPKTSDQPTEIEGPTNENSSSNGEAVSDNKPTAETETSQAPSLEVFNLDSDEEEPSTMDDQEIAQETEVVTEALPDCTRKRKCVNESCPNDSNTYYIADNSTVSFYDGKKNRHYVCETCASVVAVRNSKLIEGIHNFEDLLALDLGKDCKDPIEVLDSDSDDEVDPGDEDQEVLGEEGAKFIEEKLADMLNATWEKFKMDSRLSDTVDALKEQMAELEREGKQVDDMLKECQVSTDKLRNELYATFQPEILELTPLCIIDTPNFAFTAMVDPPSPSESNRQLKRRMSPSNEQAAKRPAIPLGYTPLNAENDDSATAEKGAAEDDVSTIVIVFKEPLHWSLIGPMEDSFGVTTNETAPCMQLPTTHNTDIAVVKLSAEVAPADLPPPGNILRASLRAGMAVYGKRKELRSWGKATVIEVEGAGTSEYTRCRVKFDTQQRSSYKTLTGQCIAYFEPANARMTIGTRVIALYQDTNLQVLGQKQSESFYAGVVAEIPNPVNNYRYLIFFDHGYAQYAKHANTRLVCECSSLVWDEVDSVSKDFIRKYLLEYPERPMDFIRKYLLEYPERPMVRLHAGQTIKTEKYLLEYPERPMVRLHAGQTIKXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEGLHQEVRAGVPRAAHGKWCTSKVLKVDASIVLVQFGREAQDRVEWIYRGSNRLAPLFLEQQAAERQRPRALPRAQAHSRTNTPYVEYTRSDEQMNKPNEAQQKEMINEEIRRQRAVAKKSTAQPVQNIPPVSSKLENFTSRVVYYTPKNAVRPYRISGAHVCGPGCRRRDVLALKDLRTYNPLAKPLLSGWERQIVRWKGNKAVMYRAPCGRRLRDMNELHKYLRLVASDMGVDLFDFNPSTHCLAEFVINKCLISKKVSPMLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -