Psen014428.1
Basic Information
- Insect
- Phoebis sennae
- Gene Symbol
- lrrfip2
- Assembly
- GCA_001586405.1
- Location
- LQNK01000861.1:178017-186901[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.2e-67 7.9e-63 212.6 13.9 1 222 116 327 116 335 0.94 2 2 0.032 3.1e+02 0.5 0.0 188 222 338 370 326 372 0.76
Sequence Information
- Coding Sequence
- ATGGGCAATAAAACCGAGATGGCTACGCCCGAAAACACCGACGAAGAAAGCGGGGAAGCATTTACCGATGGTGATTTTGGTGATTCCGACGATGACTTCGTTGAAAGAAAAGACGAAACTAAATCTTCAAATATTCCAGTCAACGAAACAGTTAACACAACCTTAAATAGTGAGAATGACTGTAACGAAAACATTATAAACGGTCTGAACAGTTTAAATAGTGTTGAAAACGGTGAAACGAATGGTGATTTGCAAAATAGTGATGTGGAAACTGTTGATGCGCGAAAGGATTCCGACAGCGATAATAATCCTATAATTGGCATCCTTGGAGACCAACACAATCATGCAGAACAACGGTTGGCGGCGCGGCGGGCGGCCCGGGCTGAGGCGCGCGAGATTCGCATGCGGGAGCTGGAGCGGCAGCAGAGGGAACAGGAGGACCATGCCGACAAGGCCTACGATATGTATGCAGAGACTGTGGGACGTCGTGGTGGCACCAGGCTAGCGGCGCTCAGCCCGGGCGGGTTACACTCGCCCAGGAGAAGCTCAGAGGATTCGGATGAAGTGCTTAGTATTAAGGACTTGAGGCACGAATTAAAAGAAGTAGAGGAGAAGTTTCGTAAGGCGATGATATTAAATGCTCAACTGGACAATGATAAGGCCGCGCTCGGTTACCAGTTGGAGTTGCTCAAGGATAGAATAGAGGAATTACAAGAAGAATACGCGCAATTACAGCGTGAACATAAAGAGAAATGCTCGTCTCACGAGCGGTTGAAACGCGAGCACGCAGCGTTGGAGCGCGAGCTGAACGCGGCGAGAGATGCGGTCCGGGCGCGAGACGCGGCCGCGGCGGAGGCCGGGTTCGCGTTCGTGGACGCGGGGGACACGTCGGTGAGCGGCGTGGGGGTGGTGCCCGCGTTGGCGCTGGTGTCGCACCAGTCGCAGGCGCTGTTGGAGGACGGGGGGGAGGGAACCCTTGCGGATGCTGGGTTCGCGTTCGTGGACGCGGGGGACACGTCGGCGAGCGGCGTGGGGGTGGTGCCCGCGTTGGCGCTGGTGTCGCACCAGTCGCAGGCGCTGTTGGAGGACGGGGGGGAGGGAACCCTTGGTGAGTGTGTGTTGGTGCTGGGAGTGGTGTTGGTGCAGCAATCGAAAGCAGTGAAGCACTGCTAG
- Protein Sequence
- MGNKTEMATPENTDEESGEAFTDGDFGDSDDDFVERKDETKSSNIPVNETVNTTLNSENDCNENIINGLNSLNSVENGETNGDLQNSDVETVDARKDSDSDNNPIIGILGDQHNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGGTRLAALSPGGLHSPRRSSEDSDEVLSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELQEEYAQLQREHKEKCSSHERLKREHAALERELNAARDAVRARDAAAAEAGFAFVDAGDTSVSGVGVVPALALVSHQSQALLEDGGEGTLADAGFAFVDAGDTSASGVGVVPALALVSHQSQALLEDGGEGTLGECVLVLGVVLVQQSKAVKHC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -