Psen002318.1
Basic Information
- Insect
- Phoebis sennae
- Gene Symbol
- -
- Assembly
- GCA_001586405.1
- Location
- LQNK01002803.1:30859-39993[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.1e-11 6.1e-08 32.3 0.0 4 39 162 198 159 202 0.90 2 4 7.9e-13 9.5e-10 38.1 0.1 1 39 213 251 213 254 0.94 3 4 2.2e-16 2.6e-13 49.5 0.1 2 45 269 313 268 313 0.96 4 4 1.5e-18 1.7e-15 56.5 0.0 1 44 320 364 320 365 0.95
Sequence Information
- Coding Sequence
- ATGCCTGGCTACGGACGATCTCAAGTAAAGTGTGAGCCGCCGTCCGACGAAGAAGATAATTCGCAATTTGGAAAATACAATACAGAACTTCTGCCGATTAAAATAGACCCGGAGTCACAATTTGAACACAATGTCTCCAAACATTTATTGGATCAGTTGCAGTTCTCATCAGAGTTGGTGCCGGTCCCAGCGGCGCCAACCGCCACGCCAGTGCCAGAAGATCTACCCGCACCACATGAAACCTCTCTAGCAATGTTGCAACCAGCTAAGAACACTACATTGGGATCAGCATTAATGGATAAACACTTATCGATGTCAAGTCAAAATGAAATTTTGGATTCATCCGATTTTGCGCCTCTTCTTTCCATCAAAGATGAACCACTATCTGAAGGAGAGAGTCAACAATTAAGTGGAGATGAAGCAAGTGAATGCAGCACTCCCGAAGTCAGCGGTAGAGGCGCACCTAAAACTTGGTCACAAAAAGACATGGAAAAGGCTCTAGATGCTTTAAAGAACCACCATATGAGCCTAACGAAAGCGTCATCTACATATGGTATACCGTCCACGACGCTATGGCAGAGGGCTCACCGGTTGGGGATCGATACTCCGAAGAAAGAAGGAGCTTCTAAAACCTGGAGTGAGGAGGATCTAAAGGGAGCTTTACATGCTTTGCGCACGGGTGCTATATCAGCAAACAAAGCTAGTAAGGCATATGGCATTCCCAGTAGCACGTTATACAAGATAGCTCGTCGCGAGGGCATCCGCCTGGCCGCCCCGTTCAACGCCGCGCCCACATCCTGGCGCCGCGCAGACCTGGAGCGAGCTCTGGCTGCGATACGGTGTGGAGCTGCGTCCGTGCAGCGTGCAGCTTCGCATTATGGAATACCTACGGGTACTTTGTATGGGCGATGTAAGCGTGAAGGCATCGAGCTGTCCCGTTCAAACCCCACACCATGGTCTGAAGATGCGATGGGAGAAGCACTTGAAGCAGTCAGAGTTGGTCAGATGTCTATAAACCAAGCTGCCATTCATTTCAACCTGCCATATTCATCCCTGTATGGTCGATTCAAGAGATGCAAGTACCAGGTTTTACAGGATCAACAAATGCAACTACAAGAAAACAAGTCAGAGGAGCATCAAGACATCCAAAACCAAGAGTTCTACCCCGTGCCCTCGCCCTACGAATCTGACACTTATCAGTACATGGGCGAGGTTTCCTCTATGCAAAGCCTACAGGAGCATTACAGCCAAGCAATGTACTATACACAGTGCAATGTTACCAGCTGA
- Protein Sequence
- MPGYGRSQVKCEPPSDEEDNSQFGKYNTELLPIKIDPESQFEHNVSKHLLDQLQFSSELVPVPAAPTATPVPEDLPAPHETSLAMLQPAKNTTLGSALMDKHLSMSSQNEILDSSDFAPLLSIKDEPLSEGESQQLSGDEASECSTPEVSGRGAPKTWSQKDMEKALDALKNHHMSLTKASSTYGIPSTTLWQRAHRLGIDTPKKEGASKTWSEEDLKGALHALRTGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTSWRRADLERALAAIRCGAASVQRAASHYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHFNLPYSSLYGRFKRCKYQVLQDQQMQLQENKSEEHQDIQNQEFYPVPSPYESDTYQYMGEVSSMQSLQEHYSQAMYYTQCNVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00710121;
- 90% Identity
- -
- 80% Identity
- -