Pmet026881.1
Basic Information
- Insect
- Phlogophora meticulosa
- Gene Symbol
- -
- Assembly
- GCA_905147745.1
- Location
- CAJHWW010000004.1:1734594-1736804[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6e-10 1.5e-07 31.8 0.0 3 35 17 49 15 55 0.93 2 2 6.6 1.6e+03 -0.4 0.0 22 30 142 150 128 151 0.74
Sequence Information
- Coding Sequence
- ATGTCTCGGAAGTATCAAAGAACGACACTACGAGCATCATGGAGTGCAGACGACTTAGATAAAGCCATGCGTAGTGTACTAAACAAAGTAATGGGTGTTAATAAGGCATCCAGAAACTTTGGCATACCATCTCGAACCCTAAGAAGACTCATTTTATCAGGAAAATCAAAGGGTCCTCTAGGACGTAAACCAGTATTTTCAGGTGAATACGAAAAAAAACTGGTTGCCCATATAAAGAAACTGGAAAAAGTTGGATTCGCCCCTGACAGAAAAGACGTAAAAGAAATGGCATTTCAACTAGCTAAGAAACTCAATATTAAAAACCCATTTTCAGCAACTTCAGAATCAGCTGGAAATGTATGGTTTTCGGGATTCATGGCTCGCAACTCAGAATTAAGTCAAAGAAAATCAGAAGGCTTGTCACTTGCTCGAGCTTATGGAGTTAATAGAAAAGATGTACAGGACTTTTTTGATTTACTAGCCAAAATATACGAAGAAAGTGATTTGGCAAATCACCCCGAAGATATTTTCAACATGGACGAGTCCGGCATACAGGTGAACAACAAACCAGGAAGAGTAGTCGCCACAAAGGGAGCCAAAGATGTCTACACGCTCACTAGCTCTGAAAAGGGTGAAAACGTAACGGTCATTGCTTGTTGTAATGCACAAGATCTCTTCATGCAATGGTTTGAAGAAGTGTTTCTGCGTCACAAGAGTTCTCGAAGAACATTGTTAATATTAGATGGTCACAGCTCGCATAGTAACAATATTCGCCTACTGGAAGTGGCTAAAGAAAATGATGTCATTCTTTTGTGCTTACCAAGTCACACTACGCATGCTCTGCAGCCACTTGATAGAGCCTTTTTTAGGCCATTGAAGGTATACTTTGCCCAGGAAGCGAAGACGTGGATGGTCAGGAACAAAGACAAGAAGTTGACGCGCTATGACGTGTCTAAATTAATCGGAAGAGCTTGGGGCAAAGCTGCCACTGTTTCCAATGGTGTGTCAGCTTTAAAATCATGTGGAATTTATCCTTTTGATCCGAGTGCCATTCCTGATCACTATTTTTCACTATCCGATTCATTGCGAGACCAAAATTTAGTTGTTGAAGATGAGGATGGGACGTCAAGAGAGTCTCTGTCATTACTTCAAGAATATGACGATAGTGCACTACTTGCGTTTGATACAATCCATTCATCCCCACAGCATATCGAGAATGATTTAGAGGCCAGGACATTAGGATCACTACCTGTAGTCACTTCTGAATTCCAACCTGAGCCAGGTCCTTCAGGGCTAAATCTAACTAATCAAAATTATGAAGATAGTTTAATGGCAGTAGTATTTGAGCATACATTGCCTATGCAAGATGCACCTGTGGCAGAAGAGTTACATCAAATGAATATCGTTTTGCCAATAACACCACGAAAACATGCGGAACAGTGTCATATCGAGAGTGAGTCGTGTCTGACTATTGCGAAGTCTAATCTTATTGATTTGATTGAACAAACCCCTGAAAAGCAAATAGGATCTACCGAGTCTGAAGCAACACCATCCAAAGTTTTGAATGACATCCATCCAGTGCCTAAACTCCCAAAACAAGAAAAAGGGGATAAAAAGAAGCCAACAAAACGTCCTGTCAGAAATAAGAATAAGAAAAAAGAAAGCTATTCATCGTCTTCTGAAAGCAATGACGAAAATGAGGGTAGGGTAGATACTTCTGAAGAAGAAATGTCAGACGAACACGATGACCTTAACAGATGCGTTGAATGCACGGAAAATTATTATGACACACAATCCACTGAAGATTGGATTCAATGCCCGTCTTGTTTATCATGGTTGCATGAGTTTTGCACAATGTATAACCCTATGTGTAATCGGTGTGGACGCAAAGCCAAAAAAGAAGCTGTTAACAAAAATAGACAGTAA
- Protein Sequence
- MSRKYQRTTLRASWSADDLDKAMRSVLNKVMGVNKASRNFGIPSRTLRRLILSGKSKGPLGRKPVFSGEYEKKLVAHIKKLEKVGFAPDRKDVKEMAFQLAKKLNIKNPFSATSESAGNVWFSGFMARNSELSQRKSEGLSLARAYGVNRKDVQDFFDLLAKIYEESDLANHPEDIFNMDESGIQVNNKPGRVVATKGAKDVYTLTSSEKGENVTVIACCNAQDLFMQWFEEVFLRHKSSRRTLLILDGHSSHSNNIRLLEVAKENDVILLCLPSHTTHALQPLDRAFFRPLKVYFAQEAKTWMVRNKDKKLTRYDVSKLIGRAWGKAATVSNGVSALKSCGIYPFDPSAIPDHYFSLSDSLRDQNLVVEDEDGTSRESLSLLQEYDDSALLAFDTIHSSPQHIENDLEARTLGSLPVVTSEFQPEPGPSGLNLTNQNYEDSLMAVVFEHTLPMQDAPVAEELHQMNIVLPITPRKHAEQCHIESESCLTIAKSNLIDLIEQTPEKQIGSTESEATPSKVLNDIHPVPKLPKQEKGDKKKPTKRPVRNKNKKKESYSSSSESNDENEGRVDTSEEEMSDEHDDLNRCVECTENYYDTQSTEDWIQCPSCLSWLHEFCTMYNPMCNRCGRKAKKEAVNKNRQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00123291;
- 90% Identity
- -
- 80% Identity
- -