Aepo015562.1
Basic Information
- Insect
- Apamea epomidion
- Gene Symbol
- -
- Assembly
- GCA_947507525.1
- Location
- OX382224.1:29508612-29510369[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.6e-10 2e-07 31.0 0.0 3 37 17 51 15 57 0.93 2 2 2.8 1.2e+03 -0.3 0.0 22 30 142 150 128 151 0.76
Sequence Information
- Coding Sequence
- ATGTCTCGGAAGTATGAAAGAAGGACATTACGAGCATCATGGAGTGCGGACGACTTAGACAAAGCCATGCGTAGTGTCCTCAGCAAAGTAATGGGTGTTAATGAGGCATCCAGAAACTTTGGCATACCGTCTCGAACTCTAAGAAGACACATTTTATCAGGAAAATCAAAGGGCCCTCTAGGACGTAAACCAGTATTTTCTGTAGAATATGAAAAAAAACTGGTTGCCGATATAAAGAAATTGGAAAAAGTTGGATTTGCCCCTGACAGAAAAGATGTAAAAGAAATGGCATTTCAACTAGCTAAAAAACTTAATATTAAAAATCAATTTTCAGCAAGTTCAGAATCAGCTGGAAATGTATGGTTTTCGGGATTCATGGCTCGCAACTCAGAATTAAGTCAAAGAAAATCAGAAAGCTTGTCACTTGCCCGAGCTTATGGAGTTAATAGAAAAGATGTACAGGATTTTTTTGATTTACTAGCCAAAATCTACGAAGAAAATGATTTTGCAAATCACCCCGAAGATATTTTCAACATGGACGAGTCCGGCATACAGGTGAACAACAAGCCAGGAAGAGTAATTGCCACAAAGGGAGCCAAAGATGTCTACACGCTCACTAGCTCTGAAAAGGGTGAAAACGTAACGGTGATTGCTTGTTGTAATGCTCAAGGTAACTTCCTTCCCCCTGTTTTAATCTATAAGGGTACTTACAGCAAACCACAATTTTCCGAAGGTCTTCCTCCAGGATCACAGGTTTTCATGAACAAAAAGTCTTCTTATATAAATACAGATCTCTTCATGCAATGGTTTGAAGAAGTGTTTCTGCGTCACAAGAGTCCTCGAAAAACATTGTTAATATTAGATGGTCACAGCTCGCACAGTAACAATATTTGCCTACTGGAAGTGGCTAAAGAAAACGATGTTATTCTTTTGTGCCTACCAAGTCACACTACGCATGCTCTGCAGCCTCTTGATAGAGCCTCTTTTAGACCATTGAAGGTGTACTTTGCCCAGGAAGCGACATGGATGGTCAGGAACAAAGAGAAGAAGTTGACACGCTATGACGTGTCTAAGTTAATCGGACGAGCTTGGGGCAAAGCTGCCACTGTTTCCAACGGTGTGTCAGCTTTAAAATCATGTGGAATTTATCCTTTTGATCCGAGTGCCATTCCTGATCACTATTTTTCACTATCTGATTCGCTGCGAGACCAAAATTTAGTTGTTGAAGATGAGGATGGGACGTCAAGAGAGTCTCTGTCATTACTTCATGAATATGACGATAGTGAACTAATTGCCTTTGATACAATTCATTCATCATCGCAGCAAGTCGTAAATGATTTAGAGCCCAGGACATTAGGACCACCACCTGTCGTTGTGACTGAGTTCCAACCTGAGCCAGGTCCTTCAGGACTACATCTAACTTATCCAAATTACGAAGATAGTTTGATGGAAGTAGTAACTGAACATTCATTGCCTGTGCAAGATGCACCTGTGGCAGAAGAGTTTGACCAAATGAATATCATAATGCCAAAAACACCACAAAAGTATCCGGTACAATGTCGTATCGAGAGTGAGGCGGGTCTGACTATTGCGAAATCTAATCTTATTGATTTGATTGAACAAACCCCTGAAAAGCAAATAGGATCTACTGAGTATGAAGCAACACCATCCAAAGTTTTGAATGAAATCCATCCAGTGCCTAAACTTCCAGTAGTATTGTCTAAAAGAAAAAAAAACAGCTGTTATTTTAACTTCTGA
- Protein Sequence
- MSRKYERRTLRASWSADDLDKAMRSVLSKVMGVNEASRNFGIPSRTLRRHILSGKSKGPLGRKPVFSVEYEKKLVADIKKLEKVGFAPDRKDVKEMAFQLAKKLNIKNQFSASSESAGNVWFSGFMARNSELSQRKSESLSLARAYGVNRKDVQDFFDLLAKIYEENDFANHPEDIFNMDESGIQVNNKPGRVIATKGAKDVYTLTSSEKGENVTVIACCNAQGNFLPPVLIYKGTYSKPQFSEGLPPGSQVFMNKKSSYINTDLFMQWFEEVFLRHKSPRKTLLILDGHSSHSNNICLLEVAKENDVILLCLPSHTTHALQPLDRASFRPLKVYFAQEATWMVRNKEKKLTRYDVSKLIGRAWGKAATVSNGVSALKSCGIYPFDPSAIPDHYFSLSDSLRDQNLVVEDEDGTSRESLSLLHEYDDSELIAFDTIHSSSQQVVNDLEPRTLGPPPVVVTEFQPEPGPSGLHLTYPNYEDSLMEVVTEHSLPVQDAPVAEEFDQMNIIMPKTPQKYPVQCRIESEAGLTIAKSNLIDLIEQTPEKQIGSTEYEATPSKVLNEIHPVPKLPVVLSKRKKNSCYFNF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01192589;
- 90% Identity
- -
- 80% Identity
- -