Ppap007487.1
Basic Information
- Insect
- Phlebotomus papatasi
- Gene Symbol
- -
- Assembly
- GCA_000262795.1
- Location
- Scaffold2056:15400-22912[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 4.5e-07 0.0024 17.2 1.0 3 47 111 155 107 160 0.87 2 5 1.3e-05 0.074 12.5 0.7 20 44 184 208 181 218 0.87 3 5 0.28 1.5e+03 -1.3 0.0 21 44 213 236 210 241 0.82 4 5 4.9e-05 0.27 10.7 0.1 21 44 241 264 224 274 0.83 5 5 0.03 1.7e+02 1.8 0.2 18 52 265 300 262 302 0.80
Sequence Information
- Coding Sequence
- ATGAGCGAGGGAACAGAATCAGGGCCAAAAAAGTGCCGCACTTGCTTGGAGGAGTCTCCTGAAGTGGAGTCTCTCTACCAGATAACAGAGATTTCCAGGAAAATTGCAGATTTGGCAACGTTTCTTAAGGAACTAACCGATCTTGAGTGCGATGAAAATGACGGATTGCCGGCTTTTATCTGCCTGGAGTGCGTCAAAGAAATATCCCGAGCTGTAACGTTCAAGGAGAAGTGCATAAATTCTGACAATGTCCTGCGAGGAAGGAGTGTCGCAAAAAACACAGAGAATCCTTCGGAATACCAAGTAGAACCTGAGAAAAAGCCTCGGGAGTCCAAGAGaaaaaaaGGAACCACAAAGACAAGGAAGAAGGGGACAAAATCTCAATCAGGACCTCCTTTTAAATGCGACATTTGCTGCAAAATCCTCAGCAATTCGGGTTCCTATCGCTATCACATGCGTCTCCATTCTGATGAGACTCCCTACCTCTGCAGTCAATGCGGGGAGAAATTTAAGACCAGAAATGCCTACGATGGCCACATGATGACCCACAATTCCAATAATCCTCACACTTGCAACATCTGCGGGAAATCCTACAGACAGGCAGCATCCCTGAGGTGCCATGTCCTCAATCACACCGGAGAAAAGCCATTCCTGTGTGTCCTTTGCGGAAAAGGAATGACCCAAAAAAGTGGCTACAAGAAACACATGCTAACGCATACGGGAGATAAGCCCCATACTTGCGATGTTTGCCATAAATCCTTCAGATACTCAAGCAACCTTCACGTCCACCGAAGATCTCACAGCGACAAGAAGCCTTACGTTTGTGGGGAATGTTCCAAGCGATTTCACACTAAAGAACAACTAAAGCGACATGTTCTTATTCATACCGGATCGAAGCCCTATTCCTGTGAGTACTGTAGCAAAAGTTTCAATCGCCGGAGTACGCTGAAAGTCCACAGATTCCTGCACACCGGAGAGAGAAAGTACAAATGCAACCAGTGCCCAAAGAGCTACATCCAGCAACATTGTCTAATCAGCCACATGACCAGTCATGCTAAGCCTCCTGGACAGGGGACCAGTGAAAGTCAGTCGAGTGTTTAG
- Protein Sequence
- MSEGTESGPKKCRTCLEESPEVESLYQITEISRKIADLATFLKELTDLECDENDGLPAFICLECVKEISRAVTFKEKCINSDNVLRGRSVAKNTENPSEYQVEPEKKPRESKRKKGTTKTRKKGTKSQSGPPFKCDICCKILSNSGSYRYHMRLHSDETPYLCSQCGEKFKTRNAYDGHMMTHNSNNPHTCNICGKSYRQAASLRCHVLNHTGEKPFLCVLCGKGMTQKSGYKKHMLTHTGDKPHTCDVCHKSFRYSSNLHVHRRSHSDKKPYVCGECSKRFHTKEQLKRHVLIHTGSKPYSCEYCSKSFNRRSTLKVHRFLHTGERKYKCNQCPKSYIQQHCLISHMTSHAKPPGQGTSESQSSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01192086;
- 90% Identity
- iTF_01192086;
- 80% Identity
- iTF_01192086;