Parg011519.1
Basic Information
- Insect
- Phlebotomus argentipes
- Gene Symbol
- -
- Assembly
- GCA_947086385.1
- Location
- CAMTYR010000025.1:11679976-11681078[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.3e-05 0.033 13.8 0.2 22 46 184 208 170 216 0.86 2 4 0.053 1.3e+02 2.3 0.1 23 47 213 237 209 242 0.87 3 4 0.0018 4.5 7.0 0.0 20 46 268 294 262 300 0.84 4 4 0.0063 16 5.2 0.1 21 45 297 321 293 326 0.87
Sequence Information
- Coding Sequence
- ATGAGAAATAATCTCGATTTTTACACGGTGAAGGAGAGGATTTTCCTCGTGAAGACATTCTACAAGAATGACAGTGATGCAAAGTGCGTGAAGAGTAAGTATTTACTGGAATACGGAGCCACAATCGATGGGCCGACGGAGGAACTTATTTTTGAAGTCATTAATCTGTTTGAGGAAACTGGCAGCGTCCGGGAGATTCCAGAGCAGAAGGTGTCACTCGACGATCCGTTCGGTGACAGCGGACTTTTGTGTGAAATCAAGGTTGAAGCACCGGAAATCAAGACTGAGGATGTAGATTACACTCAGGATTCTCATGGTGTGGATGACAATGTGTTCCACACGGAAGACAGTGAACATAAGCGGGTGCAAAAGGAAAAAACATCCACCATGCGAAGAAATAGGACCAGCAAGACGATTCGTGGCATCAGAATCCACATGGCTCGTCATGCCACCGAGAGGCTGTCCTGCAAGTATTGCCAGGAGACTTTCCCGTCCAAGTTCCAGCTGAAGCGGCACAGAGCGGAGATGCACAAGAAGGCGCCGAAAGTCAaggcgccagtccagtgtccgctgtgccccaagacattccgagaggcgaacaacatgcgcaagcacctgccagtgcactcggacaagaaggatgcggtgtgtgaggtgtgtggcaatgcctacaagagcaagcacacgctgcgcatccacatgagactgcacactggagaggagcccttcaagtgtgactaccaaggctgcggccgcacgttcaggagccagggctccttcattatccacaagcggagccacacggacgagagaccctatccgtgtccgcactgcggcaagggattcaaggaccgcggcaacctgagggcacacatccgagtgcacacgggcgagaatccctacaaatgcgaattgtgcggcaaggaaacgaaacagaagcaaaatctgcagagccacatgaTCCATTACCACAAAATATACGGCAGTAAATAA
- Protein Sequence
- MRNNLDFYTVKERIFLVKTFYKNDSDAKCVKSKYLLEYGATIDGPTEELIFEVINLFEETGSVREIPEQKVSLDDPFGDSGLLCEIKVEAPEIKTEDVDYTQDSHGVDDNVFHTEDSEHKRVQKEKTSTMRRNRTSKTIRGIRIHMARHATERLSCKYCQETFPSKFQLKRHRAEMHKKAPKVKAPVQCPLCPKTFREANNMRKHLPVHSDKKDAVCEVCGNAYKSKHTLRIHMRLHTGEEPFKCDYQGCGRTFRSQGSFIIHKRSHTDERPYPCPHCGKGFKDRGNLRAHIRVHTGENPYKCELCGKETKQKQNLQSHMIHYHKIYGSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01191361;
- 90% Identity
- iTF_01191361;
- 80% Identity
- iTF_01191361;