Parg008854.1
Basic Information
- Insect
- Phlebotomus argentipes
- Gene Symbol
- -
- Assembly
- GCA_947086385.1
- Location
- CAMTYR010000037.1:15156215-15157987[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.00076 1.9 8.2 0.1 17 48 208 239 203 246 0.84 2 6 9.4e-05 0.23 11.1 0.1 25 48 279 302 269 306 0.88 3 6 0.00025 0.62 9.7 0.3 24 48 341 365 330 367 0.85 4 6 0.66 1.6e+03 -1.2 0.1 21 31 470 480 466 496 0.80 5 6 0.0027 6.7 6.4 0.0 21 46 498 523 490 529 0.86 6 6 0.036 91 2.8 0.1 21 46 526 551 522 553 0.90
Sequence Information
- Coding Sequence
- ATGAGTGAAAAAGACTTCTCTCTCAGTATTCCTGTGGATGAAAAGCGTGGCAAACCAGCATCGGAACTACATATTTGTCGAATATGTGAGACACAAGATGATCTGCTGGATATTCTCACCGAAAGACACACTCACATCTATGAGAAACTCCAGAAGATTGCCACCTTCAAGGAGGAAGACAGCAGCAATACCTTCAAATATGTGTGTTATGACTGCAGAGATAAAGTAGATGAATTCTACGAGTTCAAGCGCAAGTGTGAAGACACGTATGAGAAACTGTGCAAGGAATTGCTTGAGGACTCGGATGAGAACAGAAAGGGGGACAGATCCTCTCCGGGCAGCGATGTTTTTCACATTGAAGATGTATTCGTGAAGACTGAATATCCAGTGGATGAGATCTTCTGTCGCGACGACACTGATGACGAGTCTGATAATGATTTTGACGAGAATTGCATGGATTTCCTGCAAGTGAAGGTGGAGGACAGGAATCCCGAGGTGAAGGACGAGGATGGCGAGGAGAGGCGAACAAGAAGGAAGAATAGAAAGTCAGTGGACAGGAGTTATCAGTGCAGTGAGTGCGATGAGACTTTCCAGAATCACTACTATTACACAAAGCATAAGGCCACCCATCAAGAAGCTAAGGACACCATCTGCTCTATTTGTAACCATGAATTCTCGACAAAACAGAATCTAAAGCGCCACATTGAGGACATTCATGAGAAGGTGGAGAAGCCGAGAGACGACAAAGAATACCAGTGCACACAGTGTGAGTTGACATTCAAGAATCACTACTATCTCACAAAGCACCAGGGCGTGCACACGACCCAGAAGAAGAACATCTGTCCCATATGTGGCCAGGAGTATTCAACGAAGCAGAACCTGCGGCGCCACATTGAGGACATCCATGAGAAGATCAAGAAAGCCAAGGGAAAAGACTCATACCAGTGCAATCAGTGCGACAAATCCTTCAAGAATCACTACTTCCTCACCAAGCATCGCATGATCCACACCAACTCCAAGAAGAACGTCTGTCCGCACTGCAATCAGATGTATTCCACGAAGCAGAacctccggcgccacattgaggacatccacgagaaattgcgcaatcacctgtgcacaatctgtggcaagggattcgcccagatcaccactctgaagtcccactacaacgtccattcgaagatcaagttccagtgcgacgtgtgcgggaagcgcttcaagacggagatgtacctgaagctgcacaagctgcgccatatcccgcccgaggagcgcacggacaagatcaagaagcggttgaagagtgacggctccaaggccaagaaggtcatctgcatctgctccttctgcggcaagatctccaacacggcggccatccatcaaaaccaccttcgcacgcatacgggcgagaagcccttcgagtgcgacatctgcaagaagtgtttctccttcaagttcgtcctggagacacacatgagggtgcacacgggcgagaagccctataagtgtgacacctgcggaatggccttccgccagagtgcccatctcaagacgcacaagagagtgcacacgggcgagaagccctacaaatgcgtcgtctgcgagaaggccttcgcggagagacggagcctcaaggtgcacatgagactccacactggggagTCCACATGA
- Protein Sequence
- MSEKDFSLSIPVDEKRGKPASELHICRICETQDDLLDILTERHTHIYEKLQKIATFKEEDSSNTFKYVCYDCRDKVDEFYEFKRKCEDTYEKLCKELLEDSDENRKGDRSSPGSDVFHIEDVFVKTEYPVDEIFCRDDTDDESDNDFDENCMDFLQVKVEDRNPEVKDEDGEERRTRRKNRKSVDRSYQCSECDETFQNHYYYTKHKATHQEAKDTICSICNHEFSTKQNLKRHIEDIHEKVEKPRDDKEYQCTQCELTFKNHYYLTKHQGVHTTQKKNICPICGQEYSTKQNLRRHIEDIHEKIKKAKGKDSYQCNQCDKSFKNHYFLTKHRMIHTNSKKNVCPHCNQMYSTKQNLRRHIEDIHEKLRNHLCTICGKGFAQITTLKSHYNVHSKIKFQCDVCGKRFKTEMYLKLHKLRHIPPEERTDKIKKRLKSDGSKAKKVICICSFCGKISNTAAIHQNHLRTHTGEKPFECDICKKCFSFKFVLETHMRVHTGEKPYKCDTCGMAFRQSAHLKTHKRVHTGEKPYKCVVCEKAFAERRSLKVHMRLHTGEST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01191385;
- 90% Identity
- iTF_01191385;
- 80% Identity
- iTF_01191385;