Pcae055627.1
Basic Information
- Insect
- Philophylla caesio
- Gene Symbol
- retn_1
- Assembly
- GCA_963971545.1
- Location
- OZ020606.1:98293861-98327405[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.2e-26 3.5e-22 81.0 0.0 2 89 34 119 33 119 0.96 2 2 6.1 6.7e+04 -3.3 0.0 12 31 153 167 146 176 0.58
Sequence Information
- Coding Sequence
- ATGGGTAACTGCGCTGCGATTGCCTTAAGGAGCGATGCGAGTGGCGTTGATGTGCTAATTTTGATCTTTAAGCTTTACGAGATCAACGATGATCCGAAACGGAAAGAATTTCTGGATGACttgttttcatttatgcaaAAAAGAGGCACACCCATCAATCGTTTACCAATTATGGCGAAATCAGTTTTGGATTTATATGAATTATACAATTTGGTAATAGCGCGTGGCGGACTAGTTGATGTTATCAATAAAAAGTTATGGCAGGAAATCATAAAGGGACTACACTTGCCATCGAGCATAACTAGCGCCGCATTCACATTGAGAACAcaGTATATGAAATATCTCTACCCTTACGAATGCGATAAGAAGAATCTGAGTTCACCCGCTGAACTGCAAGCGGCCATCGATGGAAATCGCCGCGAAGGTCGACGCTCCAGTTATGGACAATACGAGGCCATGCATAACCAAATGCAAAtgCCCCAAATCGGTCGTCAGACACTGACGACAGGCATTCAACAAATGTCACCACTAGCGCTTGTCACACACGCCGCCAACAATCAGCAGGCGCAAGCAGCGGCTGCCGCTGCCGCCGCACACCACAGACTGATGGCGCCTGCCTTCGGGCAGATGCCGAATTTAGTGACGCATGAAATCGAACAGCGCATGATGGAATACCTGAAGCTGATACAGGTGAAGAAGGAGCAGCAGAGTAGCGCTGCCGCGGCGGCTGCAGTAGCGGCGGCGGCGGCCGCTGGCGGCAATGCTGTTGGTGTTGGCGTAGGCGATGCCGTGTCTGTGGCAGCAGGGCGTGTGGGCGCGGGTAGCGCAAGTGGTGGCGGTGGTAGTGTCGGGCACATTAAGCAGCAGCGCCAACGTTCACAAAGTCCCGAGATGAGCACACGTGACGCGATGAATGCGTTTGAGATGTCACGCGTTGCCTTTTGGCAAATGTACCACAACAACACCAGTCCGCCAGCGTCTATAAATGCTTCGCCGCAGGGAAGTGTAGGCGGTGCCGGAAGCATAGGTGGCGGCGGTGTTGGTGGCGCCAGCAGCAGAGTAGCAGGTCTTAGTGAACAGCACAGCGAGGCTTTGAACCTTTCCGAGTCACCGCCAAATCTCAACAACATCAAACGGGAGCGTGAACGTGAACAATCGCCGGATGCTTGCGATCGCGACGATTTTCAACATCAACCACCGCCGGCGAAGCGTGGCGTTGGTGGTGGCGCTCTCAACTTTCCAAGCGGCTTTTACCTACCACCCAGCatggcagcggcagcagcagcagcggcggccGCAAATTTTCATCAGCACAATAGCAACAATCTGTCACAAGACTCCGATCCCGAGGATAACGATGAAGATGGTGATGCACACAACAGCACTGCGAATTCATTGACGCATGGCGAAGAGAGCGACCGACCAGCATCGATGAACGGTCATCATCACCATCATCAGCACCATCGCCATCATTTGCCGCACAATATGCACCTGCCGCATCATCAACATCTCGACAACAATACAAGTGGCAATCACGACAAGTCTGATGATTCGGCCATTGAAAATTCACCTTCGACAAGTGCAGCGTCGGCTGGTGGTAACGGTAGTGGCGGTGTTGGTAGTGGCAATGGCAATGGCGTTGGCAGTGTTAATAGCGGTCACATTTCACCCGTTTCCACCAAGAAGATACATTTGTCGAAGCAGCACAATAATGGTGACTCATCAATAATGGACTGTAGCGGCGGTACCGCGCGCGCTCAGTCCAATAGCCCTGGCTTGGCTGGCGTAGAGGATGCATTGAGCCTACTATCGGGTATGCAGTTCCGCGTAATGCGAAATGGCACCAACGCCAATGGTGAGTCACAGCTGATTGTGAATCTCGAGTTAAATGGCATTAAATACTCGGGTCTGCTAATAGCCAATACCGCCGGTAGGGAATCCACTGACAAATCACACGAAGACGTAAACCAAAATAAAACCGAACTTATTGATAACAATACTATAGCAGATATTGCGACAGAGGAGGTAAAAGATGTGAGTGGTGTCGTAAGTGGCGCCGATGCAGACATCGAAGATGAGGACATTGCGGACGCTGCCAGTTCAATTAGCGCCGAAGAAACACCAACGAAAGTGACGAAAAATGGAAGCGCGATTGTTGGACTCAACAGTAATGGACCAATGAGTGAAGGCAGCGTACTACAAGATGCACTTATGACAACATCATAG
- Protein Sequence
- MGNCAAIALRSDASGVDVLILIFKLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECDKKNLSSPAELQAAIDGNRREGRRSSYGQYEAMHNQMQMPQIGRQTLTTGIQQMSPLALVTHAANNQQAQAAAAAAAAHHRLMAPAFGQMPNLVTHEIEQRMMEYLKLIQVKKEQQSSAAAAAAVAAAAAAGGNAVGVGVGDAVSVAAGRVGAGSASGGGGSVGHIKQQRQRSQSPEMSTRDAMNAFEMSRVAFWQMYHNNTSPPASINASPQGSVGGAGSIGGGGVGGASSRVAGLSEQHSEALNLSESPPNLNNIKREREREQSPDACDRDDFQHQPPPAKRGVGGGALNFPSGFYLPPSMAAAAAAAAAANFHQHNSNNLSQDSDPEDNDEDGDAHNSTANSLTHGEESDRPASMNGHHHHHQHHRHHLPHNMHLPHHQHLDNNTSGNHDKSDDSAIENSPSTSAASAGGNGSGGVGSGNGNGVGSVNSGHISPVSTKKIHLSKQHNNGDSSIMDCSGGTARAQSNSPGLAGVEDALSLLSGMQFRVMRNGTNANGESQLIVNLELNGIKYSGLLIANTAGRESTDKSHEDVNQNKTELIDNNTIADIATEEVKDVSGVVSGADADIEDEDIADAASSISAEETPTKVTKNGSAIVGLNSNGPMSEGSVLQDALMTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00090948;
- 90% Identity
- -
- 80% Identity
- -