Ppla081244.1
Basic Information
- Insect
- Philopedon plagiatum
- Gene Symbol
- -
- Assembly
- GCA_963971165.1
- Location
- OZ020195.1:92138135-92143190[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0044 90 5.7 0.1 12 38 143 169 136 180 0.78 2 4 0.00074 15 8.2 0.1 22 48 212 238 205 242 0.85 3 4 4.2e-05 0.84 12.2 0.1 21 52 239 270 235 270 0.88 4 4 0.0021 43 6.7 0.0 21 48 267 294 265 298 0.89
Sequence Information
- Coding Sequence
- ATGGAAGTGGATAATTTTGACGGGGATGATTTCCACCCCTCTATTGAACCTATGGTAATTATAAACAGtgaagaagatgaagaagaaaacGTGAATTTACAACCCGATTCTCGGGATCCTCTCGACACAAACAATAGCTCGAGAGATTCCACCAGCTCGTCTCGATCTTCTCGAAAATCTAGCCCCGATAACGGGCACTTTATCGGTAACATAGGTCCGGAGATAAGTATATTTCCTGTGAAGAAAAAACCGAAACCGTCATTTAAAATACGGTTGTTCCGGAAGAAGTACGAGAACGAAGAAACGGACGATTTTTTTGAAGACGAGGACGTCAAGGCGAAAGTGAAACAGAAGATTATTAATCATGTTAGAACTCCAGGCAACCGAACTCCAGTAAGACTGATAACCAAAGAAGAGGCTGCGAGCTGCGAGGAGCCCTACGCGAAACGTAAAAGTAACCCCCTCGAAAAGTGCCCCATTTGTAAAAAGTTCTTCAGGCGAATGAAAACTCACCTAACGAAACACGAGATTTTACAGAATCAGGAGGCTTGTTCGGGACTGATTTGTGAAGTGTGTAATAAGGCTTTTAACAATCATAGtaatttgttgATTCATATGCGGACCCATACGGGTGATAAACCCTACGCCTGTGAGGTGTGCAATAAGTCGTTCTCTCAAAGCTGTAATTTGGTCAACCATATGAGAATTCACACTGGTGAAAAGCCCTTCAAGTGCCCCCATTGCGACAGGGCGTTCACCCAATCGGGTAATCTCAATAATCACATCCGCCTCCACACGGACGAAAAACCTTTCAAGTGTCATTTTTGTGATAAGGCCTTCGTGCAGAGCGGGAATCTCAATTCTCACATAAGGAATAACCATAGACTTAAGGAATATCCCGACATGCAAAACGAAATGATACTGTCCTAA
- Protein Sequence
- MEVDNFDGDDFHPSIEPMVIINSEEDEEENVNLQPDSRDPLDTNNSSRDSTSSSRSSRKSSPDNGHFIGNIGPEISIFPVKKKPKPSFKIRLFRKKYENEETDDFFEDEDVKAKVKQKIINHVRTPGNRTPVRLITKEEAASCEEPYAKRKSNPLEKCPICKKFFRRMKTHLTKHEILQNQEACSGLICEVCNKAFNNHSNLLIHMRTHTGDKPYACEVCNKSFSQSCNLVNHMRIHTGEKPFKCPHCDRAFTQSGNLNNHIRLHTDEKPFKCHFCDKAFVQSGNLNSHIRNNHRLKEYPDMQNEMILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00196678;
- 90% Identity
- iTF_01188681;
- 80% Identity
- iTF_01188681;