Basic Information

Insect: Philopedon plagiatum
Gene Symbol: -
Assembly: GCA_963971165.1
Location: OZ020191.1:137409750-137425506[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.056 1.1e+03 2.2 0.0 23 47 206 230 201 235 0.87

2 5 0.31 6.3e+03 -0.2 0.1 21 44 232 255 230 260 0.85

3 5 9.8e-06 0.2 14.2 0.1 20 44 259 283 257 287 0.93

4 5 0.016 3.2e+02 3.9 0.0 23 44 318 339 311 348 0.87

5 5 5.7e-05 1.2 11.8 0.2 25 53 348 376 340 377 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.056	1.1e+03	2.2	0.0	23	47	206	230	201	235	0.87
2	5	0.31	6.3e+03	-0.2	0.1	21	44	232	255	230	260	0.85
3	5	9.8e-06	0.2	14.2	0.1	20	44	259	283	257	287	0.93
4	5	0.016	3.2e+02	3.9	0.0	23	44	318	339	311	348	0.87
5	5	5.7e-05	1.2	11.8	0.2	25	53	348	376	340	377	0.85

Sequence Information

Coding Sequence: ATGCAAGAGAAAGATGGTTTTTGTCTGCAGTGCCAAAAGCCTTTATCAGCACCTTCTAATCGTTTGGTACAAGACACCTGTGGACATAAAAAGTGCCGCTCTTGTCTTCTAGACGATGTGGAAAATTGCAAACAGTGTTTCAGTTCTGCCAATGATCAAAATGGAGATAGAAGTAACATACCCACAATTACTGATAACCATACTGCCGTGATTCAGTGCAATGGAAAAGCACGACTTAACTGTGATAAAATTTTGGATGACGTAGAGAAAAAATGTGATATATCTACTACCACTGATAGAAAACAAAACGTACATTTCTCGAATTGTGGTAACGAGTCAGTGATAAGAAAGCCAGAGAATAGAGACGTTAAAAAGTTGAAAGGAAAAATTACTGGCAAGAAAAAGTCAATAAGTGTTCCCTCTCATATTATTCTGCAGTCAGATCCGCTTTCCTATCTATGCACTATatgcaaaaaaacgtttttcaCAAAGTCTCATGTTAAATATCATCAATATTGTGCTGGAGaaatgaAACCATATAAATGTAAGGTATGCCAAaaggaatttattttaaaagcgcAGCTCCAAGTTCACATGTACAAGCACGAAAATGTAAAACCTTACAGCTGTAGCATCTGCCAAAAATCGTTTGGTGAGAAGAACAAACTATCACGTCACATGGTTCTTCATTCCTCGGAGAAGAACTATATATGTCCAGATTGCGCGAAGGCGTTTAAAAGCAAAGAGTCTTTAAGAATTCACTGTCTCATTCACAAAGCTGAGAAACCATATGCTTGTACAGTTTGTTCGGCGAAGTTTAACAATTCGTCCAATTTGAGGAAACATCTAGTGTCGCATTCAGACGAAAAAGCCCACATGTGCGATCAGTGTGGAAGACGATTTAAGTTAAAATGGGCTCTATCAGTGCACAGAAAGTCTCATCTAAGAGTGAGGCCGCATACATGTAATTTgtgctttaaaaattttgttaattttaaggATCTGCAGAGGCACACTTTAATACATTCAGAATCGAAAGGATACACTTGCGGCATCTGCCACACGAGTTTCCGACGCAAAGACAACCTACACCGCCACACGAAGAACACGCACCCAGGTAAGAAGGGTGAAGTAATCGAGAACGGTCTGACAACGCCGAAATTGCCAAAAAAACCGGTGGTAGTCATTGATAATCCGAACGCTATAAAGGTGATAACCGCTTCGCCGGCGGCGGCGTCGGCAGCGGCTATAACTAGAACCATAGCCGAGGCGAGTGTCGTGGCGCCCTCGCATCAGCAACATACCGCTAAATCTACTGATTCTAGGCCGACCGGATCTGTCATCAACGGACCCATCAAGCTCGCCTTTAAGACGCCGGCTTTCAAGAGCCATTACAATATTGCGAGAGACTGCGACTTTATACCGCCTGCTCAAATTGCGAAGTCTCTCCCGCTGGCGGAATCAGTAGACATGGCCCAGAAACTACTATCGTCTAGCGGCGATACTCTTAATGTAGTCCGCAGCATAGACGAGCGCACATCTACGGAGATATGTCAAAAAATCTTGTCCGTACCGAGCAAGAGTCCCGACGAACCGACGTTAAAACCTGCAGTGACTGCGCCAACGCCGCAGCAAAACTTAACTTCGTACTCGAGTACGTTTCACTACGAGACTTCGTTTCGATATGGGACGCACGCTATGATTAAAAACATAAAGTTCAAGGTGCCAGAACAGTATACGAACTTGTTTaagcaaaataacaataataataaagttgatAATAGTAATAGTACTAGTGATAATGATAATGACGATCAGGAAGTCGGATCAGAGTCTAAAGTGTACTCGGAATTAAAATCAGTGGCAAGTACGAGTGTTATAGTGAATAACAGTAATCTTAACCAAGCCAGCGACGTCCACTGGCGCCGAAGGACTTCGCAAAATCTTGTGCTTAAGAATTAA
Protein Sequence: MQEKDGFCLQCQKPLSAPSNRLVQDTCGHKKCRSCLLDDVENCKQCFSSANDQNGDRSNIPTITDNHTAVIQCNGKARLNCDKILDDVEKKCDISTTTDRKQNVHFSNCGNESVIRKPENRDVKKLKGKITGKKKSISVPSHIILQSDPLSYLCTICKKTFFTKSHVKYHQYCAGEMKPYKCKVCQKEFILKAQLQVHMYKHENVKPYSCSICQKSFGEKNKLSRHMVLHSSEKNYICPDCAKAFKSKESLRIHCLIHKAEKPYACTVCSAKFNNSSNLRKHLVSHSDEKAHMCDQCGRRFKLKWALSVHRKSHLRVRPHTCNLCFKNFVNFKDLQRHTLIHSESKGYTCGICHTSFRRKDNLHRHTKNTHPGKKGEVIENGLTTPKLPKKPVVVIDNPNAIKVITASPAAASAAAITRTIAEASVVAPSHQQHTAKSTDSRPTGSVINGPIKLAFKTPAFKSHYNIARDCDFIPPAQIAKSLPLAESVDMAQKLLSSSGDTLNVVRSIDERTSTEICQKILSVPSKSPDEPTLKPAVTAPTPQQNLTSYSSTFHYETSFRYGTHAMIKNIKFKVPEQYTNLFKQNNNNNKVDNSNSTSDNDNDDQEVGSESKVYSELKSVASTSVIVNNSNLNQASDVHWRRRTSQNLVLKN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01188695;
90% Identity: iTF_01188695;
80% Identity: iTF_01188695;