Pspi026064.1
Basic Information
- Insect
- Philonthus spinipes
- Gene Symbol
- MBD-R2
- Assembly
- GCA_963082785.1
- Location
- OY720311.1:10824266-10844640[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.1e-13 7e-09 36.5 0.1 6 69 387 449 383 457 0.91 2 2 0.93 1.1e+04 -2.5 0.0 48 72 809 833 806 836 0.85
Sequence Information
- Coding Sequence
- ATGGGCCGAAAATGCGGCGTGAAAGATTGCTTGTCCGACGCGCAGCGCAAGGAGGACATCGGCGTGACTTTCCACAAAGTCCCACACCACGCGGACATCCGACCGAAGTGGCTGCAGCTCTGCCGGATAACGAACGGGAAGAAGTGCATCTACGTGTGCTCGAGGCATTTCCTCCGGGCTGATTTCTGCAATTTCAAAGGGAGGAAGTATATGCTGAAGCAGGGAGTGCTTCCGAGTATATTTCCGTGGAATAAGCCGGCTTCGACTCAATCGAAGTGCGATGTGAAAGAGGAGAAGGAGGATGAGGAGGTTGTGATTAAAACGGAGAGTGAAAGTGAACCGACGGTTAAGAGCATCAACGAAGTGATCGAGTCGAGTTATATGCAGCCGTTGCATATAAAAACGGAAGTGGTGGAGGTTAAGGAGGAGATGAAGAGTCCTGTTAATTTGTCGACGATCGAGCAGAAAGTGACCGCGATGAATTCGTCGACCGGGGAATTGGGTTTCGTGCCGAATGCTCGGATCGAGGCTTTGGATTTCAATCAGACGTGGAGGCCGGCCACGATTTTGGAGGTCGATTACGAGGAGAACGAGGTTTTGGTTCATTTCGATATGTACAGCAGCAAGTACGATGAGTGGATCGGGATTAATAGCAATTCGATCAGGCCCGTCGCTCAAGTGGAGAAGAAGGAGGCGGAGGTCGAGGAGACTTTTGCCGAAGGGGAACGCTGTATGGCTTCTTGGAGTGATGCTAGGAAGTTTCCCGCTACTATTACCAAAGTTATTGACACTAatACCTATGAGGTTCTATTCGATGACGGTTATGTGAAAACTTTGAAGTCTCGCAGGATCTCTAAATGCTCTTCGACGTCCCCGCAATGCAGCCCCCTGTTTCAGCCTGTCAGCGGAACCAAAGAAGACAGACGCACCAAGAAGAGAAAATTGGAcgtcactaatttatttaacaagaaaCGGCCGAAGGTTGAAAATCCTGAGAGCGGCGCCGAGGTAAAAATGGAAGTAGTCTCGGAGGATACTGCTGATTCCAAAGGGAAGACGGATGTACCGGAAGAGTGGTATCCAACttgggAAAATAACCGGCCTGTGGGTGTCGACTCGTTTGTATTAATGATGGACGGACACCTAAAATCTGTAATAGTAGCCGATCCTCGTTTGCCTCCGAAATGGGAAAAACATGTAGCTCAGAAGGTTTATGAACACGCAGCTGGAAAATGGGGCATAATTATAGTATCtcCAGAGGGTCGTAAATTCCGGCAAAAATGCGACATCAGGCAATACATAAAGGAAAACccacatttaaatttatccGAATCGATGTTCGAGTTTGTTTTGcacaaaaaacgtaaaaaagCACGTCCCCAAACTCCCCCAGCAGAATTACCCGCTCCAGAATTGACCGATAAGGAGCCTGAACAAGAACCACCTCCggtttcagaaaataaaagtaaaacattaaaaattaaatggattgATGGTGGATACAAATGTCCGATAGAGGGTTGTGGGAAAAATTTCCGAAGGGAGAACTTGGCGCAAATGCATGTTAAACATTACCATCCGGAGTTTACGAAATTTTTAGATTCCACTCCGAATGTAGCCGATTTAGCTTATGCAAGAACGGTCGTCGGAGAAGTATCGAAATCACCAGGAAGCTCGGGCTTCAATTCCGAGAAGGCTAGCCGGGAACCTCGACCCAGCAAGCCGAAACCAGCTCCTCAGAAAACCTTCAAACCCGATCCACTCGAATCCTTAAGTGAAACACAAAAAGATtcggaaattttaaaattactaaacaGCAAACCGTTCGATTCGATCAGCAAAATCGAATCCTCCTCCATTCAACCGTTACCATCCGGACTACCCCCATCGATGTATccggatattaaattaaaagatctCCTAGTAAAATCCGAAGCAGTGCCGAAAAACAATGACATCAACCTAAAATCATTAAGCTCGGCGACAACAAGGCCGACCGGTCTAAAAACTTTACTCCCAGTTAAAAAAGAAGACCCCGATCTCAAATCGACACCTTCGAAACCCCCCAAAAAGGACCTGAAGCGAAAACGTCTAGTCTCGGAAGTTGTGGAAATGCAAAGGAACAAAGAGGCGATAATCAAGGCCGAACTTCCACCGCCTCCCGTTGAAATCAAATCTGAAAACGCTCCGACAGAGCAAGCGGATAACATCATCATCGAAGGTGGGGAAGTCATCAAAATAGTTCAAATGCGGCAAGAGGAGATCATCAACTGCACGTGCGGCGTGACCGAGGAAGACGGCCTGATGATACAGTGCGAGCTGTGCTTTTGCTGGCAGCACGCTTACTGCAACAACATACAGAAGGAAATCGAAGTGCCGGAGAAGTACGTGTGTTACATTTGCCAGCATCCCGCAAAACAGAGAGAGTCGATGAAGTACATGCATGATCAGGACTGGCTGAAGTACGGGACTCTGCCTAGTTGTTCGTTTAGGGCGAGGGATGAGGAGGCCGAGAAGGAGTTGTTTGAGAAATTGAAGATTTCACACGATATAAGCGGAGGATTGGTCGAGTTGCAGGATTATGTTCACAGTTTGAAGTTGAAGATTAAAATCGCTGAagTGAAAAATCATCCAAAGTTGTACTTATGGTCAAAACCGTGGGATAAACCTCCCTTACCCGAACTCAAAGAAACACAACCAGAAGAAATGGACATCAAAGATTCCATCAAATCCGAAGACGCACAGACCGAGTCGATGCTGATGACGATACTTAAAGTGGCAAAAGAGGAAATCAAAATCAAAGAAGAATTACCGGAATTTCCAAAGCTCGACATAAACACACTAATCGAAAACAACATCGGATCGATAGTGCCCCCAGCACCGAATATTCCACAACCAGAGGCGGCAATTGAGAGCGCCGACTGCCGGCTGAATTTACTGGAACACATTCTTCACAGCCAGCAGTTGGTGGACCAGCGGTTGTCGATGTTCGAGAAGCAGCTGAAAGACTTAGACCCGTCTCTCTTCGAAGAGAACGAGGATCAGTTTGTCAAGGCGAAGCTCGTTACATCTATGGTCGTTCGGGATTTGAATACGATGAAGGAACTCGCCGATCTTCCTGCTACATGA
- Protein Sequence
- MGRKCGVKDCLSDAQRKEDIGVTFHKVPHHADIRPKWLQLCRITNGKKCIYVCSRHFLRADFCNFKGRKYMLKQGVLPSIFPWNKPASTQSKCDVKEEKEDEEVVIKTESESEPTVKSINEVIESSYMQPLHIKTEVVEVKEEMKSPVNLSTIEQKVTAMNSSTGELGFVPNARIEALDFNQTWRPATILEVDYEENEVLVHFDMYSSKYDEWIGINSNSIRPVAQVEKKEAEVEETFAEGERCMASWSDARKFPATITKVIDTNTYEVLFDDGYVKTLKSRRISKCSSTSPQCSPLFQPVSGTKEDRRTKKRKLDVTNLFNKKRPKVENPESGAEVKMEVVSEDTADSKGKTDVPEEWYPTWENNRPVGVDSFVLMMDGHLKSVIVADPRLPPKWEKHVAQKVYEHAAGKWGIIIVSPEGRKFRQKCDIRQYIKENPHLNLSESMFEFVLHKKRKKARPQTPPAELPAPELTDKEPEQEPPPVSENKSKTLKIKWIDGGYKCPIEGCGKNFRRENLAQMHVKHYHPEFTKFLDSTPNVADLAYARTVVGEVSKSPGSSGFNSEKASREPRPSKPKPAPQKTFKPDPLESLSETQKDSEILKLLNSKPFDSISKIESSSIQPLPSGLPPSMYPDIKLKDLLVKSEAVPKNNDINLKSLSSATTRPTGLKTLLPVKKEDPDLKSTPSKPPKKDLKRKRLVSEVVEMQRNKEAIIKAELPPPPVEIKSENAPTEQADNIIIEGGEVIKIVQMRQEEIINCTCGVTEEDGLMIQCELCFCWQHAYCNNIQKEIEVPEKYVCYICQHPAKQRESMKYMHDQDWLKYGTLPSCSFRARDEEAEKELFEKLKISHDISGGLVELQDYVHSLKLKIKIAEVKNHPKLYLWSKPWDKPPLPELKETQPEEMDIKDSIKSEDAQTESMLMTILKVAKEEIKIKEELPEFPKLDINTLIENNIGSIVPPAPNIPQPEAAIESADCRLNLLEHILHSQQLVDQRLSMFEKQLKDLDPSLFEENEDQFVKAKLVTSMVVRDLNTMKELADLPAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01186264;
- 90% Identity
- iTF_01186264;
- 80% Identity
- iTF_01186264;