Pcog028191.1
Basic Information
- Insect
- Philonthus cognatus
- Gene Symbol
- ZIPIC
- Assembly
- GCA_932526485.1
- Location
- CAKOBG010000145.1:570747-576061[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.00045 21 7.6 0.1 21 51 126 156 101 158 0.91 2 4 0.19 8.8e+03 -0.7 0.0 23 43 185 205 182 209 0.84 3 4 5.7e-06 0.27 13.7 0.0 21 48 239 266 227 271 0.85 4 4 0.00036 17 7.9 0.1 26 46 272 292 265 297 0.87
Sequence Information
- Coding Sequence
- ATGAGGAAGGCAGTAGGCATCATCACGGGTCACTGTTTTCTGGGTGGACACGCACAAAAGATAGGTCTCAATTACAATGTCTACTGCAGAGAATGCCTAGATGAGGAGGAGGAAGAAAAATTGAAACCAGACACAAAACACAATTCATGTGAAATCAGCGGTAAAAAATGTAATCCTCATCAGCTGCTTAAACAACATAAATCTGACGCTCACCGCGAAGCGGCAAAAAAAGCGGAAAAACGTCAAGAAATGAGAAACCTGTTAGAAAACTCGAAGATTAGCGACGAAAGTCAAACCTGCAGGTACAAATGCCCAGAATGCGGCCGCATTTTCAAATCCCGCTCAGCCTTCGTAAGTCACCAAACCGTACACACTGGAGAAAAACCCTTCTGCTGCCACATCTGCGGAAAGAAATTCCGCATCTCCACAGGATTAAAAGTCCACATTAACGACTATCACTTAAAGAAACGAAATTTTCCGTGCGATTACTGCGACAAGGTTTTCTCGGCAAAATCCTTTCGTAATGTTCACATGAACATACACACGAAAACCAGGCCGTACGTGTGCGAGTTGTGCGGAAAGGCTTTTACTCAAAGTGCGTCTCTGTATGTCCATAAGTTGTACCATTCGCAAGTGTTTAGGTTTAAGTGTGATGTGTGCGATAAGAAATTTAGAAGAGCGACAGAACTGAAAATACACAATAGAACGCACACTGGGGAAAGACCGTATAAATGTCCGGTTTGCGGTGCAGGATTCGCGGAAAGTAAAAGTTTGAAGGTTCACTTGCAGATCCATGATACGTCTAAAACATTCGCTTGTAATATTTGTGGGAATACATTTAAACAAGAAAGATATCTGAAGAACCATTTGAGGATTCATAGAAAAAAGGGCGATTTAGTGTAA
- Protein Sequence
- MRKAVGIITGHCFLGGHAQKIGLNYNVYCRECLDEEEEEKLKPDTKHNSCEISGKKCNPHQLLKQHKSDAHREAAKKAEKRQEMRNLLENSKISDESQTCRYKCPECGRIFKSRSAFVSHQTVHTGEKPFCCHICGKKFRISTGLKVHINDYHLKKRNFPCDYCDKVFSAKSFRNVHMNIHTKTRPYVCELCGKAFTQSASLYVHKLYHSQVFRFKCDVCDKKFRRATELKIHNRTHTGERPYKCPVCGAGFAESKSLKVHLQIHDTSKTFACNICGNTFKQERYLKNHLRIHRKKGDLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01185445;
- 90% Identity
- iTF_01185445;
- 80% Identity
- iTF_01185445;