Basic Information

Insect: Philonthus cognatus
Gene Symbol: -
Assembly: GCA_932526485.1
Location: CAKOBG010000145.1:636084-642614[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 3.8e-05 1.8 11.1 0.0 22 45 45 68 33 71 0.93

2 10 1.4 6.7e+04 -3.6 0.1 29 48 123 142 120 143 0.63

3 10 0.093 4.4e+03 0.2 0.0 26 46 149 169 147 176 0.83

4 10 0.0045 2.1e+02 4.4 0.1 24 49 175 200 169 204 0.89

5 10 0.18 8.5e+03 -0.7 0.1 26 45 208 227 202 231 0.86

6 10 0.0062 2.9e+02 4.0 0.0 27 49 274 296 264 299 0.91

7 10 0.028 1.3e+03 1.9 0.0 23 49 327 352 322 355 0.87

8 10 0.00075 35 6.9 0.3 18 49 377 407 366 409 0.78

9 10 0.00038 18 7.8 0.0 23 49 438 463 429 468 0.88

10 10 0.087 4.1e+03 0.3 0.1 26 49 480 503 472 507 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	3.8e-05	1.8	11.1	0.0	22	45	45	68	33	71	0.93
2	10	1.4	6.7e+04	-3.6	0.1	29	48	123	142	120	143	0.63
3	10	0.093	4.4e+03	0.2	0.0	26	46	149	169	147	176	0.83
4	10	0.0045	2.1e+02	4.4	0.1	24	49	175	200	169	204	0.89
5	10	0.18	8.5e+03	-0.7	0.1	26	45	208	227	202	231	0.86
6	10	0.0062	2.9e+02	4.0	0.0	27	49	274	296	264	299	0.91
7	10	0.028	1.3e+03	1.9	0.0	23	49	327	352	322	355	0.87
8	10	0.00075	35	6.9	0.3	18	49	377	407	366	409	0.78
9	10	0.00038	18	7.8	0.0	23	49	438	463	429	468	0.88
10	10	0.087	4.1e+03	0.3	0.1	26	49	480	503	472	507	0.86

Sequence Information

Coding Sequence: ATGGTAAACGGCCTAATATGTAATATCTGTGGGAGGAAATTTAACAGCAAAACCGGGCTGAGGACACATAAAAAAGTGCACTGTTCGAAAGACGCTAAAAATAAGGATACTGGTGGCGGAGAGAACTGGAGGGAGCAATTGTTTACGTGCGATATGTGCAAGCAATCGTTTCAGTTGAAAAGCAACTTGAGACGTCACCTAGAAAATTCAATCAACAAAGAAGACGAATTTACATCTAATGATCCATTACGAGATGTTTTCGAAGAATCTACTGAGAGTTCCTCTGCCAGCAATAAAAATCAGGATTCCTTCGCCGAACAAACTGACAAGATAACGGATGATGATGACTTCGCTTTTAAATGTCATGCCTGCAATATAGGTTATAAAAAACGGTGGGGGTTAAAACGGCATATCTCGTATGTGCACAGCAAAATTATTAACTACAGTTGTGATATTTGTCATAAGGGTTTTGTGGAGAAATTTCATTTAAAGAGGCACTTGACGACACACACTGATGCTATGCCGTATCAATGCGAAGTTTGTTATAAGTCTTTCGCGAAGAGTTCCGAGCTGAACACTCACAGATCATCTGTACATTTTCTCGACGACCAAAAGTCGTTTCGTTGTAACTTCTGTCAAAGAACATTTAAAAGAGAAAGTAATCTGATCAAACATTTGAATACGCATCAAAATAGTCAGGAATCTGCCGAGAATGATACCCTTGACTATCAGGAATCTACTTTCAGCAGGAAGAATGCAAAAAACGATCAACTTCAGCAAAGTAGCAAGATGGCGAATGATGACGATGGTTTGCATAGATGTGATGTCTGCGATAAAAGATTAAAAAACACGACGAGCTTAAAACGGCACGTTGAGTATGTCCATATGGGCATCAAAATGTTTAGTTGTGATATTTGTAAGAAAAGGTTCTCCACAAAAGCAATACTATCGGAGCATTTGAACACGCATGGTGATAGTCGTCCGAATCAATGCGGTATCTGCAATAAATCGTTTAACAGCAAATCTGGATTACGAATACACATGTTGCAGCACTTTCCTGAAAAGAAGAATACCGAAGAGGGTGCCTCTTTTAGCAGTAAGAATGCGGAAACTGAACATAATCAAGGTCAGGAGCAAAGTAGCTTACATAAATGCGATGTCTGCAATAAAAGATTTAAACACACGCCGAATTTAAAACGGCACGTTGAGCACGTTCACATGCGGATCAAAATGTTTAGTTGCGAAATTTGTAAGAAAAATTTCAGCACAAAAGTTATTCTGTCGGAGCATCTGAACATGCATAGTGATAGCCGTCCGAATCAATGCGGTATCTGCAAGAAATCATTTAACAACAAATCTGGATTAAGGAGACACATGCTGAAACATTTTCCTGAAAAGAAGAATACTGACGGAGGAAAGGAAAAAAATAGAAAAATTATATGCGATATTTGCAACAAACAGTTTAAACTACTTAGCAGTTTCAAACGCCACATGCAAATGGTTCATATGACACTTAAATGCGATGTTTGTGGTAAACAGTTCCGTGAGAAAAGTGCAATGGATGTGCATGTTTGCTGGAACCAGGGTGAAAGTGAGGGAGAAACTAGTCCGTATAAATTTTTTGAGGTTATGTCACTAAATGTAAACACGGTCATGCGCATCCCAGTGCGCATGGGAAGAATGCCGATGCCTCTTTTCTATTTGGGCAGCAGTACGCACGCTTTGTTCTGCGCACAGCTGGCGCGCGCTACCTGCTCCGGCAGGGGTGTCGACTACCTTTACATAATCTCGCATAACTTCGACAATTTGTTTCCAATCGACATGAAACTTTAG
Protein Sequence: MVNGLICNICGRKFNSKTGLRTHKKVHCSKDAKNKDTGGGENWREQLFTCDMCKQSFQLKSNLRRHLENSINKEDEFTSNDPLRDVFEESTESSSASNKNQDSFAEQTDKITDDDDFAFKCHACNIGYKKRWGLKRHISYVHSKIINYSCDICHKGFVEKFHLKRHLTTHTDAMPYQCEVCYKSFAKSSELNTHRSSVHFLDDQKSFRCNFCQRTFKRESNLIKHLNTHQNSQESAENDTLDYQESTFSRKNAKNDQLQQSSKMANDDDGLHRCDVCDKRLKNTTSLKRHVEYVHMGIKMFSCDICKKRFSTKAILSEHLNTHGDSRPNQCGICNKSFNSKSGLRIHMLQHFPEKKNTEEGASFSSKNAETEHNQGQEQSSLHKCDVCNKRFKHTPNLKRHVEHVHMRIKMFSCEICKKNFSTKVILSEHLNMHSDSRPNQCGICKKSFNNKSGLRRHMLKHFPEKKNTDGGKEKNRKIICDICNKQFKLLSSFKRHMQMVHMTLKCDVCGKQFREKSAMDVHVCWNQGESEGETSPYKFFEVMSLNVNTVMRIPVRMGRMPMPLFYLGSSTHALFCAQLARATCSGRGVDYLYIISHNFDNLFPIDMKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01185412;
90% Identity: iTF_01185412;
80% Identity: iTF_01185412;