Pcog073469.1
Basic Information
- Insect
- Philonthus cognatus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_932526485.1
- Location
- CAKOBG010000512.1:71355-92500[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.1e-109 7.7e-104 349.6 28.4 1 300 228 519 228 519 0.94 2 2 0.0071 6.7e+02 1.7 4.1 120 171 517 568 517 580 0.85
Sequence Information
- Coding Sequence
- ATGGTGCTAGTTGCGCATTTTTCTGCCGATAAAAAATGGAACCTCGTGCTACTAACCAAAAAACTCGTGCGTTCTTCTTCCTTGGCAGATTGCCTGCCTTCGGACAACCAGCGAGTGCTGCTAAGTACTCATGATAAGACGAATAGAAAATCCGTCGCGATGGGCGAAACGGGAAATTCCTCGTCGGCGATAATGGGGGAGGATGTCGGGGGCGCGGACAGCGACGGTGGGGACAGTTGCGCCTCGATCACGGACATTCTGAACGACTTGGAGAGCGACGGTCCGTCGTCGGAGATGGGGCAAAAAAACGGTCGCGAGGCGAAAAACGGCGATTCGGCCGAAATCGCGAGTTCGAAGGTGATCGGCGCAACACCTGGCGAGACGGCCGCAGAAGACATGGAGGGTGATACGGACATGGAGGTCGATTATACGCCGAGAAAGCGGAAAAATAGCGGGGACGCGTTCGGTAGCGGTGTCAGGAAGCTGAGTGTGAAGGGTGCGACCGTTGATGAGAGCAATGATGATGATGATAATGTTATACAGCAGTTTCTTGATTCCGGTGTACATGATAGAGGAATCTCCTATTCCAGCCAGTGCGAGGCATTAAAAGAGGTACAAAAGTACATTTTCCTCCTCCTCATCATCAAGACTCCAAATGCCCTCTACAGTAGTCGTTATGGGGCGGAGGCTCGCCTTTTGGCGAAGAGGGCAGCACGTGCAGAGGCGCGCGAGATCAGGATGCGCGACCTGGAGAGGCAGCAGCGTGAACAGGAGGAAAACGCCGACAGGCAGTTCGACATGCTGGCCGAGCCGATGATCAGGAGGCCCCCGAGCACCTCCAGGTTCCTGTCAAGCAGGCGGTCCTCCGAGGACTCTTTGGAGGACACCGGCAGCCTGCGGGATCTCAGGCATGAGCTCAAGGAGGTCGAGGAGAAGTTCCGGAAGGCGATGATCGCCAACGCCCAGCTGGACAACGACAAAGCCGCCCAAACCTACCAGCTCGAGTTACTGAAAGACAGGTTAGAAGAATTAGAAGAAGACTATTCGCAACTGAAGCGAGAGCACAGGGAAAAATGCAGGGATTTCGAACAGCTCAAACGGGTGACTTGCAAACTCAAAGAGGACCTAGCCTTCATGAAGGCCGAGCTGGAGGAAAGGGACCGGCTGATAACGGAAAAGGGGCTGGTCATCGTCGGCGAGGAGGAGCCCGTCTGCGAGGAGAACGGCGAGCCGTCCTCTTCCGCTAACGGTCCCACTAGGATTCGGAGGGCGCTCGTTAGCGTTGAGAACGCCCATTTGTTGGAAAACGCCGGAGAGGGAAGTTTAGATGTTCGATTAGCGAGGTTCGCTAAAGAGAGAGGGGAGCTGCAGGACCAAATTAGTCATTTAAAATTAGAACTGGAGGAGGAGAGGAACCAGCGGAGGAAACATCCAGGAGGCTCTACTATGAACGGACCTGACTCGGAATACGATGCTGCAGATATACAAAGAGAAGCGAGCAAACAATTAGCCGAGTTCAAGTTCAGGGCGCAAAAAGCTGAACAGGATGTAGCTACTTTACAAGCGACAGTGGCCCGCCTCGAAAGTCAAGTGATCAGGTATAAGTCCGCAGCGGAAATATCGGAAAAGTCAGAGGAGGCTCTCAAGGCGGAGAAAAGGAAACTGCAAAGAGAGGCACGGGAAGCACAGAATAGGGCGGAGGAGTTAGAAATGTCGAACACGCATCTGATAAAACGCCTGGACAAGCTGAAGAACGCCAAGTCGGCCCTACTTAAAGAACTTTGA
- Protein Sequence
- MVLVAHFSADKKWNLVLLTKKLVRSSSLADCLPSDNQRVLLSTHDKTNRKSVAMGETGNSSSAIMGEDVGGADSDGGDSCASITDILNDLESDGPSSEMGQKNGREAKNGDSAEIASSKVIGATPGETAAEDMEGDTDMEVDYTPRKRKNSGDAFGSGVRKLSVKGATVDESNDDDDNVIQQFLDSGVHDRGISYSSQCEALKEVQKYIFLLLIIKTPNALYSSRYGAEARLLAKRAARAEAREIRMRDLERQQREQEENADRQFDMLAEPMIRRPPSTSRFLSSRRSSEDSLEDTGSLRDLRHELKEVEEKFRKAMIANAQLDNDKAAQTYQLELLKDRLEELEEDYSQLKREHREKCRDFEQLKRVTCKLKEDLAFMKAELEERDRLITEKGLVIVGEEEPVCEENGEPSSSANGPTRIRRALVSVENAHLLENAGEGSLDVRLARFAKERGELQDQISHLKLELEEERNQRRKHPGGSTMNGPDSEYDAADIQREASKQLAEFKFRAQKAEQDVATLQATVARLESQVIRYKSAAEISEKSEEALKAEKRKLQREAREAQNRAEELEMSNTHLIKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -