Pcog075603.1
Basic Information
- Insect
- Philonthus cognatus
- Gene Symbol
- -
- Assembly
- GCA_932526485.1
- Location
- CAKOBG010000548.1:397734-406197[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.4e-12 7.8e-09 37.4 0.0 1 39 156 195 156 199 0.90 2 4 8.1e-13 8.5e-10 40.5 0.1 1 39 210 248 210 251 0.95 3 4 1.5e-18 1.6e-15 58.8 0.0 1 45 265 310 265 310 0.98 4 4 0.12 1.2e+02 4.8 0.1 1 13 317 329 317 329 0.92
Sequence Information
- Coding Sequence
- ATGCTCTTCTCGCAGTTCGGTGTAGATAATGAAGACTTCCCGCCAGAACCGCCGGCGCCGACCGCGACACCTGTCGGACACGTGGACATGCAAGACCATTCGCCAACACGGACCCTACTCACCAACTCTTCACTGCACAGGACGGACCTTTCAGATTCACACATAAAATTTGGAGACATAAAGAAAGAGATTGACATAAAATTCGAAACGTTACGATCATACGACCAGGATTCACTGCTGGACATTGAAGCCTCCCGCATGTCGGCACACGACCATTCCATGGACAGCCACGAAGACACAGACCAAAACATTCACCACACGACCATGATGATCACACCTGAACTGATGGGAATTATGCCTGGAGCTTCACACCGAATGGAGCAACTGGATCACCTAGGTAAAACAAATGGTCATTCGGATCTCAACGCGCCTGGATCACGACATGGAGGAGGACCAAAAACCTGGACGCAAGATGATATGGAATTGGCTTTAGACGCTTTAAGGAACCACAATATGAGCTTAACGAAGGCATCAGCAACATATGGAATCCCATCAACGACGTTATGGCAACGAGCGCACCGTTTAGGCATCGACACACCTAAAAAGGAGGGCCCGACGAAATCCTGGACGGAGGAGAACCTGAATTCCGCATTGGAAGCGCTTCGGACGGGGACGATATCGGCGAACAAGGCCAGTAAGGCCTACGGGATACCGAGCAGCACCTTGTACAAAATCGCCAGGAGGGAGGGCATCCGGCTGGCGGCGCCTTTTAACGCGGCGCCCACCACGTGGACGCCCGAGGATTTGGAGAAGGCGCTGGAGTCGATACGGACGGGACAGACGTCGGTGCAGAGGGCGTCGACGGAGTACGGCATTCCGACGGGGACGCTCTACGGGAGGTGTAAACGGGAGGGCATCGAGTTGTCCCGGTCGAATCCCACGCCTTGGTCAGAGGATGCCATGGGCGAAGCTTTAGAGGCTGTTAGGTAA
- Protein Sequence
- MLFSQFGVDNEDFPPEPPAPTATPVGHVDMQDHSPTRTLLTNSSLHRTDLSDSHIKFGDIKKEIDIKFETLRSYDQDSLLDIEASRMSAHDHSMDSHEDTDQNIHHTTMMITPELMGIMPGASHRMEQLDHLGKTNGHSDLNAPGSRHGGGPKTWTQDDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRTGQTSVQRASTEYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00369486;
- 90% Identity
- iTF_00369486;
- 80% Identity
- -