Cven003036.1
Basic Information
- Insect
- Coproporus ventriculus
- Gene Symbol
- -
- Assembly
- GCA_027574865.2
- Location
- JAODAH020007401.1:236-2905[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 8.3e-13 1.8e-09 37.5 0.0 1 39 156 195 156 199 0.90 2 4 1.3e-13 2.8e-10 40.1 0.1 1 39 210 248 210 251 0.95 3 4 1.2e-19 2.5e-16 59.5 0.0 1 45 265 310 265 310 0.98 4 4 1.9e-16 4e-13 49.2 0.0 1 39 317 356 317 360 0.93
Sequence Information
- Coding Sequence
- ATGATTCAGCTGCTCTTCTCACAGTTTGGTGTGGATAATGAAGATTTTCCACCGGAACCACCAGCTCCAACAGCAACACCAGTTGGGCATGTTGAAATGCAAGATCACTCACCAACACGGACTCTACTCACAAATTCTTCATTACGAATGGATCTCTCAgATtctcatattaaaataagtgaaataaaaaaggagatcgatattaaatttgaaactttgcGATCGTTCGACCAGGATTCATTACTGGATATTGATAGTTCACAAATGTCAGGGCCTGACCATTCCATGGATAGTCATGAAGATTTAGATCAAAACATGCATCAGACTATGATGATTACACCTGAATTAATGGGAATGATGCCAGGTGCTTCACATCGAATGGagcaAATGGATCATTCAGGTAAAACAAATGGGCATGGAGAACACACACCGACAACACGACATACAGGAGGGCCTAAAACGTGGACACAAGAAGACATGGATTTAGCTTTAGATGCCTTAAGAAATCACAATATGAGTTTAAcaaagGCCTCAGCAACCTACGGTATTCCATCCACAACACTCTGGCAAAGAGCACATAGATTAGGCATAGACACACCCAAAAAAGAAGGTCCAACGAAATCGTGGAcggaagaaaatttaaattctgccTTAGAAGCATTAAGAACGGGAACAATTTCCGCAAATAAAGCAAGTAAAGCATATGGTATTCCAAGTAGTACTCTATACAAAATTGCAAGGCGAGAAGGTATTCGTTTAGCTGCACCTTTCAATGCTGCGCCAACGACGTGGACTCCTGAAGATTTAGAAAAAGCATTAGAATCAATTCGCTCTGGACAAACTTCAGTACAGAGGGCTTCTACAGAATATGGAATTCCAACTGGGACGTTATATGGAAGGTGTAAACGTGAAGGAATTGAATTATCAAGATCAAATCCTACACCATGGTCTGAAGATGCCATGGGGGAGGCTTTAGAAGCTGTAAGATTAGGGCATATGTCCATTAATCAAGCAGCTATACATTTTAACCTGCCATATTCATCTTTATACGGACGCTTCAAACGAGGAGTGAAATATGATGCAGATCCACTAGATCAAAACAGCGATAGTCAATCACAGCTCGATCCCCAATCAATAATGGTGGAATATGGAAACCAGCACCAAACACAATATCAGAACCAGTCCAATAGCTGA
- Protein Sequence
- MIQLLFSQFGVDNEDFPPEPPAPTATPVGHVEMQDHSPTRTLLTNSSLRMDLSDSHIKISEIKKEIDIKFETLRSFDQDSLLDIDSSQMSGPDHSMDSHEDLDQNMHQTMMITPELMGMMPGASHRMEQMDHSGKTNGHGEHTPTTRHTGGPKTWTQEDMDLALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRSGQTSVQRASTEYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHFNLPYSSLYGRFKRGVKYDADPLDQNSDSQSQLDPQSIMVEYGNQHQTQYQNQSNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01184386;
- 90% Identity
- iTF_01184386;
- 80% Identity
- -