Palb003415.1
Basic Information
- Insect
- Philonicus albiceps
- Gene Symbol
- nfxl1
- Assembly
- GCA_963969385.1
- Location
- OZ017772.1:24042310-24047223[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 1.5 2.4e+04 -3.7 1.1 15 19 166 170 165 170 0.83 2 21 0.089 1.5e+03 0.2 0.4 4 10 201 207 200 207 0.96 3 21 2.9e-08 0.00047 20.9 16.6 1 19 215 232 215 232 0.99 4 21 3.4e-06 0.056 14.3 16.0 1 18 268 286 268 287 0.99 5 21 1.4 2.2e+04 -3.6 1.8 6 10 312 316 311 316 0.89 6 21 6.7e-09 0.00011 23.0 14.6 1 19 322 340 322 340 0.99 7 21 0.91 1.5e+04 -3.0 0.5 1 7 365 370 364 372 0.49 8 21 6.5e-07 0.011 16.6 14.4 1 18 375 392 375 393 0.97 9 21 2 3.3e+04 -5.0 2.3 5 10 416 421 416 421 0.91 10 21 4.2e-07 0.0068 17.2 16.5 1 18 427 444 427 445 0.98 11 21 2.1e-08 0.00034 21.4 12.1 3 18 456 471 454 472 0.91 12 21 0.23 3.8e+03 -1.1 2.1 5 10 500 505 500 505 0.93 13 21 1.6 2.6e+04 -3.8 0.5 9 12 510 513 509 515 0.72 14 21 0.094 1.5e+03 0.1 6.3 10 19 519 528 516 528 0.91 15 21 0.0077 1.2e+02 3.6 5.3 3 12 541 550 531 550 0.84 16 21 0.72 1.2e+04 -2.7 0.9 6 10 611 615 610 615 0.89 17 21 7.2e-07 0.012 16.5 6.8 1 11 621 631 621 632 0.96 18 21 2 3.3e+04 -4.1 2.4 5 10 647 652 647 652 0.92 19 21 0.0012 20 6.2 12.7 3 18 661 676 660 677 0.95 20 21 2 3.3e+04 -5.5 2.1 9 13 683 687 682 687 0.72 21 21 0.00017 2.8 8.9 12.1 1 16 728 742 728 748 0.87
Sequence Information
- Coding Sequence
- ATGTCCggaaatttttggaaagtcCCATCTCAACATAAAAAACCAAAGAATAATAAGAAACTCGAAAATGCTGACCaaatagcaattaaaaaattcgagGAGGTCCAAAATAGAAACATTGAGAAAGCCAAAGTTTATACAGAGAATTATAGTTCGAGTTCAGACGAGGAGGAAGAATTGAATGCCGATGATATTTtagGAAAACTATTCGGGGGATATTCTGGTGAGCCGAGTCAGCTTTCGAAGACTGCAACTTTCTTAGAGAACTTCTTACAATCTGGATCAGTTATTTGCTTAATTTGCATTGGGACTGTAAAGCGAAATAACCCTATCTGGTCATGTAAGaactgcttttgttttttccatCTCCATTGCATCAAGCGTTGGGGTAATGATTCCATTTCCCAGCAGAAGTCCAGCCTAAGTGAAGAGCAGGGTTACTACAATAACTTAGGGGAATATGTGCCTAAAAAAGTCATCACGATTAGATGGCACTGTCCAAAGTGCCGCAAGGAGTACAAACCCGagaatattccaaaaatatatacttgcTTTTGCGAGAAGGAACTCAATCCCAACGCTCATCCATGGTTAATCCCCCATTCATGTGGAGAGCTATGTGAAAAGTATCTTGTGCCTGACTGCGGACATAGATGCCTCCTTCTCTGCCATCCTGGGCCATGTCCACCTTGCCCGCAGAGTGTTTTTACTTCTTGTAAATGTGGAAAATCCAAGCCGAAGTCTAGAAGATGTTTTCAGAAGACATGGACATGCGACTTTAAAtgtcAAGATTTTTTAGCTTGCGGAATTCACAGATGTGGTAAAGGATGCCACAGTCCAGGAGAGTGTCCTCcttgcataaaaaaaagtaaacagaaATGCCAATGCGGAGCAGAAATTTCTGAAAGGAGTTGTTCCGAGTTATTGTGGCAGTGTAAGAAGGTTTGCAATAAATCTTACAGCTGTGGTGTACACAAATGCAAAGAACGTTGTCATTCTGGGGATTGTGGAAGTTGCCCATTAGGACTGCCAAGATCTTGTCCATGCGGAAAaactaaaagcaTTGCACCATGCAGTGAGGTCATAGATACTTGTGGGGATACATGCCAAAAACTTTTAGCTTGTGGGCTTCACCACTGTACACAGAGGTGTCACAAGGGAGAATGTAGTTCATGTCTGACTctaatagaaaagaaatgcCGTTGTGGACTTCGAACAAAGGAACAACCATGCTCTCGTTTATTTACTTGTGAAACAAAGTGTAAACAAATGAGAGATTGTGGAAAGCATATGTGTAACAAGAAATGCTGTGACGGTCAATGTCCACCCTGCGATAAAATATGTTCGAAAAATCTTTCATGTAAGAAACATAAATGTAAGTCAGTGTGCCATGATGGTCCTTGTTATCCGTGCGATTTAAAATCACAAGTTAAATGTCGATGCAGTTATACATCGATAACAGTACCCTGTGGAAGAGAGAAAAAAACTCGTCCCCCGAAATGCCAACAACCTTGCAGaattcctTCAAAATGCCATCACCAAAATCCTCATAATTGTCACCTGTACGACTGTCCACCATGCACGCAAAGATGTGGTCTGAAGAATGATGTGTCTAAGTGTAAGCATCCTTGTGAAGCTAAGTGCCACGATGCAGTAAAAGTTGCAATAAACGCTAGCAATCAAAAACTAATTAGCATTTGGGACTGGAATGTAGAGAAAtttgaaataaaaaagttgcCGCATCCGCGATGTGAAGTTAAAGTAATGGTAACATGCATTGGAGGTCATGAAACAGCCCTTTGGCCCTGTTGGAATTCAAAGCCTACCTCTTGTGAGAAGATATGTGGGCGAGTTTTGAAATGTGGTAATCACACTTGCCAGCGAATTTGTCATGTTGTTCTTAATATACaggataaaaatGAACAAGAAGGCTGCATTACTTGCGAGCAAGAGTGCAATATACCCAGGGCTGATGGATGTATTCATCCATGTCAAAGACGTTGTCATTTAGCTCCATGCGCACCTTGTGGGGTtactattaaaacaaaatgccaTTGTGGCCTTAGTCAAGTCTACTATAAATGTTCTGAATTCAACAGAACAGATCTCGATCCTCACTCAATGGAAATATTTCGTAATCAACTTAGAAACTGCGGAAATAGATGCATTAAGACTTACCCTTGTGGTCATCGGTGCACATCGACATGTCATTCAAATGAATGTCCCGATCCGGaaaaatgcaagaaaaaagtgaaaatttattgtaaatgtaaaaacttgAAAGCAGAAATTACTTGCGAAAAGTATCGTAATGGATTCATCATTATTCCTTGTGACGATTTTTGTGTTCAAAAATCAAAGGCTGAAGAACGTATTAAGCAAGAGACAGAGaaaaaacaacgaaaattAGAAGAAGAGAAAAATCGTTTCGAGTTGGAACAATTCGAAAAGaaatttggaaagaaaaaacatcGCGAACGCAAGGTTATCGAGGAAAATCCAAAAGAGAGAAGTTTCAAACTTCTCTGGACAGTGTTTGGTACTGCATTAGTAATATTTTCCATAGTTATAGTCACTTACCTTTTTAAATGA
- Protein Sequence
- MSGNFWKVPSQHKKPKNNKKLENADQIAIKKFEEVQNRNIEKAKVYTENYSSSSDEEEELNADDILGKLFGGYSGEPSQLSKTATFLENFLQSGSVICLICIGTVKRNNPIWSCKNCFCFFHLHCIKRWGNDSISQQKSSLSEEQGYYNNLGEYVPKKVITIRWHCPKCRKEYKPENIPKIYTCFCEKELNPNAHPWLIPHSCGELCEKYLVPDCGHRCLLLCHPGPCPPCPQSVFTSCKCGKSKPKSRRCFQKTWTCDFKCQDFLACGIHRCGKGCHSPGECPPCIKKSKQKCQCGAEISERSCSELLWQCKKVCNKSYSCGVHKCKERCHSGDCGSCPLGLPRSCPCGKTKSIAPCSEVIDTCGDTCQKLLACGLHHCTQRCHKGECSSCLTLIEKKCRCGLRTKEQPCSRLFTCETKCKQMRDCGKHMCNKKCCDGQCPPCDKICSKNLSCKKHKCKSVCHDGPCYPCDLKSQVKCRCSYTSITVPCGREKKTRPPKCQQPCRIPSKCHHQNPHNCHLYDCPPCTQRCGLKNDVSKCKHPCEAKCHDAVKVAINASNQKLISIWDWNVEKFEIKKLPHPRCEVKVMVTCIGGHETALWPCWNSKPTSCEKICGRVLKCGNHTCQRICHVVLNIQDKNEQEGCITCEQECNIPRADGCIHPCQRRCHLAPCAPCGVTIKTKCHCGLSQVYYKCSEFNRTDLDPHSMEIFRNQLRNCGNRCIKTYPCGHRCTSTCHSNECPDPEKCKKKVKIYCKCKNLKAEITCEKYRNGFIIIPCDDFCVQKSKAEERIKQETEKKQRKLEEEKNRFELEQFEKKFGKKKHRERKVIEENPKERSFKLLWTVFGTALVIFSIVIVTYLFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00937704;
- 90% Identity
- -
- 80% Identity
- -