Palb014714.1
Basic Information
- Insect
- Philonicus albiceps
- Gene Symbol
- -
- Assembly
- GCA_963969385.1
- Location
- OZ017773.1:38240492-38247332[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2.1 3e+02 3.0 0.8 2 23 245 267 244 267 0.93 2 19 0.00031 0.044 15.1 3.4 2 19 310 327 309 330 0.94 3 19 0.0044 0.64 11.4 1.3 3 23 343 363 342 363 0.92 4 19 0.12 18 6.9 0.2 3 23 372 393 371 393 0.94 5 19 0.029 4.2 8.9 1.0 1 23 399 421 399 421 0.92 6 19 0.00023 0.033 15.5 1.6 1 23 427 450 427 450 0.97 7 19 0.00034 0.049 14.9 2.9 1 23 456 478 456 478 0.99 8 19 1.3 1.9e+02 3.6 0.0 3 23 489 509 487 509 0.90 9 19 0.00049 0.071 14.4 0.7 1 23 525 547 525 547 0.97 10 19 0.054 7.8 8.0 4.2 1 23 552 574 552 574 0.95 11 19 0.056 8 8.0 0.7 1 23 590 614 590 614 0.92 12 19 0.00018 0.026 15.8 0.6 2 23 619 641 618 641 0.96 13 19 0.0023 0.33 12.3 0.6 1 23 646 669 646 669 0.96 14 19 0.0023 0.34 12.3 0.6 1 23 674 697 674 697 0.96 15 19 0.0024 0.34 12.3 0.1 2 23 701 723 700 723 0.96 16 19 0.044 6.3 8.3 3.1 1 23 729 752 729 752 0.94 17 19 0.0017 0.25 12.7 0.2 1 23 758 780 758 780 0.98 18 19 1.8e-06 0.00026 22.1 1.4 1 23 786 808 786 808 0.99 19 19 0.00047 0.067 14.5 0.1 1 23 814 839 814 839 0.97
Sequence Information
- Coding Sequence
- atgacTAACAAACAAGAATCAATTACCAAATCAATGGACTTGCCGAAGTGCGTTAGATGCTTCTGCGATCTGTTTGATGATTTTCAACTGATTTTTGATGATACCGGCCTGGAGCTCGAGCTTCAAAAATTACTGTCCGTTTGTTTTGATATGGACATTAAAGTTCGACTGGGAGAAATTCAAGCACTATGTGAAGATTGCCTAAATGAGCTTATTGATACCTATGATATTATCCAGAAAAACGAGCAGGAAGGGGCGGGTCCTTCGGGAAATCAAATCCCTGGCACgaagttaaaaaatgaagGCGATCCGCCTGAGCTAAGTTCAGGCTCTGATGATTTTGGAAGTTCAGCTGATGAGGAAATTGTTCAGAAATCatcgaaaaaacaaaaaactaaggAAGAAAAAGACTTCGGAACGAAAGAATCTCACTTAAAATACGAGCATGCACCGAGATCTAAAAAAGTTAAGGAGCATACacgaaattctaaaattgtcgaGCTCATAGAGGAGGAAAATTCGTTAGAAGAAATTGAGAAGCCAAATGAGAGCTACGATAATGAACTGGATAAtgaaaattccaatttgaaaatgccGGAAAAAGACGATGACTGCGAAGAATTTAACCAAATTGATTATTTAGACGACTTTGACGAGGAAATAGATTTCATTGAATACAAAGGACGTGTCATTCAGAGCAAATTCAATGATGTTTGCTTCCCTGAGGAGATTAAATGTCGCCTCTGTGAATCTGAGTTGAAGAACCACGTGGATTTGATGAGCCACACTATGGAAATGCACTGCGTCGAGGAGTTTGCCTATCCTTGCATAGTCGACTTGGAATGTGAATCGATGAGTTCTCAGGAGCACTTAACACTTCATTTGGTATTCAAGCACTATGATATGGATTCATTGGCAATCTACTCCAAATGTCCGGAATGTGATAAGCGTTTCAGCgatttttcctcttttaatAAGCATAGCTGCTATCAGCCGTCAGGAAAACTATCTAGAACAAAAGTGGACTGCGATGAATGCGGAAAAGTGTTTACAACAAATAAGAggtatcGCTTTCATCTTCAATATCATCTTGAGAAGCGTCGTCCAAAAGCATGCTTCATTTGTGAGACATTATTTAGGGATGaagatgaattttttgagCATGTAATGTACAATCATGAAAAATGTCTGGATTTTGTGTGCATAAGGTGTGATCGTTATTATACATCTGCTGAAACGTTTAAAAACCATCAAGAGAGTCACAAAAATGAGCGCAAGTATGCCTGCAAATTGTGTCCtaaaacttatatatataagcaCTTTTTATCCGATCACATGATAACCGATCATGATGCAAAAAGTGATTTCAAGTGCCATATTTGTGGCAAATACTGGATCAATAAGACTTATTTAAAGAATCATTTATTAACGCACAATAAGCCGAAACCAACTGAAGTTATTTGTTGCAATGAGTGCGGATTCGTGGCTGTGGATGAAGCAGAAGCTGAGGCTCACTTAGAAGATCATGAAGATAAGGAAATTCATACTGTTACTGAAATTTTGGAACGAGTGTACTTCTGCGAATATTGCGAACTACCCTATAGTTCtcctaattatttaaaagagcatagaaaactacataaaaacaaagaattccATTGTACTATTTGTTCTACTGTTTTTTCCGAGTACAAATCATTTAAGTTACATAAATCATTGCATCCTGAGTATGTGAACAGGAGAAAAACATTCACTGTATCGCACTACTTTGTATGTGATAATTCGGCATGCTCCAAGAGCTTTCTGCAGTGGGCCACTCTTAAACAACATAAAAAGCTACACGATAACCATCTCAAGTGTCCAAAATGTAAATCAGTATTCGAAAAATCctCTGATTATGAAGATCATATGCAAAAAGTACATCAAGGGCACGACTTCAATTGCCAGTTTTGTGATAAAACATTTGGAACAAGATTGGCTCTTGGTGTACATATTTCAAGGAAGCACACTCAAGaaaaattcttttgcaaTCAATGTGCGTTCAGCTATTCCTCGGAGgctttgttaaaaaatcaCCAAGACACAGTTCACACTGACATTCCTTGCGAGCAATGTGGAATTGTACTGAAAAACGTACGAAATTACACTTTACATCAGAGAGTAGTTCATGAAAGGGAGAAACGATTTTTCTGCAAATACTgcaaaaaaggatttttcaaaaattgtgatGTTATTGCACACGAACAATCGGTACATCTTAAAGTAAAACGATTTAAATGTGATTTATGTCCTTATGAAGCTGTGTACAAGGGATCTTTTACTGTTCATATGAGAGCTCATCGCAATGAGACGCCTTATGAGTGCCACCTTTGCGGTCGAGGTTTCCGGAAAAATGCTTCCTTAATAAGCCACATTAAGCGACATCAAAATATAAGAgaTTTCAAATGCCCTATAGAAGGATGTGAATATGCATACGTCGAAAAGGGCAATCTTAATTTACACATTCGTTTAAAGCATCCCAACGGAGagCCAGCTCCACAAAATCAAACCCGACGATCCGGGATAACTCGATCATATTTTAATGTGCCCAAAAcggatatttttattgatgatgatgacggcTTAAATTTTGGATCTGATGAGGAACCACCAGctaaaaccaaaagaaaacATTCTGAAGAAAGTGATCCCGATGACCCTGTTGCCAACGTTCTGAAGGAGCAAGACTCGGAACCTGCTGTGATCGTGAGGCGTAATACAAGCGATCATGATTACATCGTCCATGGGAATAGTTACGGAAGTATGATGGAAGACTGCCAAGTAGCAGAAGTGGAGGTTACTTCTAATGATTAG
- Protein Sequence
- MTNKQESITKSMDLPKCVRCFCDLFDDFQLIFDDTGLELELQKLLSVCFDMDIKVRLGEIQALCEDCLNELIDTYDIIQKNEQEGAGPSGNQIPGTKLKNEGDPPELSSGSDDFGSSADEEIVQKSSKKQKTKEEKDFGTKESHLKYEHAPRSKKVKEHTRNSKIVELIEEENSLEEIEKPNESYDNELDNENSNLKMPEKDDDCEEFNQIDYLDDFDEEIDFIEYKGRVIQSKFNDVCFPEEIKCRLCESELKNHVDLMSHTMEMHCVEEFAYPCIVDLECESMSSQEHLTLHLVFKHYDMDSLAIYSKCPECDKRFSDFSSFNKHSCYQPSGKLSRTKVDCDECGKVFTTNKRYRFHLQYHLEKRRPKACFICETLFRDEDEFFEHVMYNHEKCLDFVCIRCDRYYTSAETFKNHQESHKNERKYACKLCPKTYIYKHFLSDHMITDHDAKSDFKCHICGKYWINKTYLKNHLLTHNKPKPTEVICCNECGFVAVDEAEAEAHLEDHEDKEIHTVTEILERVYFCEYCELPYSSPNYLKEHRKLHKNKEFHCTICSTVFSEYKSFKLHKSLHPEYVNRRKTFTVSHYFVCDNSACSKSFLQWATLKQHKKLHDNHLKCPKCKSVFEKSSDYEDHMQKVHQGHDFNCQFCDKTFGTRLALGVHISRKHTQEKFFCNQCAFSYSSEALLKNHQDTVHTDIPCEQCGIVLKNVRNYTLHQRVVHEREKRFFCKYCKKGFFKNCDVIAHEQSVHLKVKRFKCDLCPYEAVYKGSFTVHMRAHRNETPYECHLCGRGFRKNASLISHIKRHQNIRDFKCPIEGCEYAYVEKGNLNLHIRLKHPNGEPAPQNQTRRSGITRSYFNVPKTDIFIDDDDGLNFGSDEEPPAKTKRKHSEESDPDDPVANVLKEQDSEPAVIVRRNTSDHDYIVHGNSYGSMMEDCQVAEVEVTSND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00628584;
- 90% Identity
- -
- 80% Identity
- -