Basic Information

Insect: Philereme transversata
Gene Symbol: -
Assembly: GCA_963924445.1
Location: OZ004342.1:32435526-32437160[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0005 9.8 7.5 0.0 22 44 36 58 27 62 0.86

2 13 0.69 1.4e+04 -2.6 0.0 22 44 109 131 107 134 0.81

3 13 0.00053 10 7.4 0.0 21 44 135 158 128 163 0.86

4 13 0.76 1.5e+04 -2.7 0.0 22 43 180 201 178 208 0.70

5 13 0.00013 2.5 9.4 0.1 21 48 208 235 204 241 0.90

6 13 0.16 3.2e+03 -0.6 0.0 21 51 236 266 232 269 0.75

7 13 0.16 3.1e+03 -0.5 0.0 21 45 264 288 258 294 0.85

8 13 0.021 4e+02 2.3 0.0 18 31 288 301 283 317 0.83

9 13 0.0031 60 5.0 0.1 14 44 368 398 364 402 0.87

10 13 4.2e-05 0.82 10.9 0.3 21 47 403 429 400 436 0.90

11 13 0.021 4e+02 2.3 0.0 22 52 432 462 429 464 0.84

12 13 0.0073 1.4e+02 3.8 0.1 21 50 459 488 455 490 0.90

13 13 0.012 2.4e+02 3.0 1.0 21 43 488 510 485 521 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0005	9.8	7.5	0.0	22	44	36	58	27	62	0.86
2	13	0.69	1.4e+04	-2.6	0.0	22	44	109	131	107	134	0.81
3	13	0.00053	10	7.4	0.0	21	44	135	158	128	163	0.86
4	13	0.76	1.5e+04	-2.7	0.0	22	43	180	201	178	208	0.70
5	13	0.00013	2.5	9.4	0.1	21	48	208	235	204	241	0.90
6	13	0.16	3.2e+03	-0.6	0.0	21	51	236	266	232	269	0.75
7	13	0.16	3.1e+03	-0.5	0.0	21	45	264	288	258	294	0.85
8	13	0.021	4e+02	2.3	0.0	18	31	288	301	283	317	0.83
9	13	0.0031	60	5.0	0.1	14	44	368	398	364	402	0.87
10	13	4.2e-05	0.82	10.9	0.3	21	47	403	429	400	436	0.90
11	13	0.021	4e+02	2.3	0.0	22	52	432	462	429	464	0.84
12	13	0.0073	1.4e+02	3.8	0.1	21	50	459	488	455	490	0.90
13	13	0.012	2.4e+02	3.0	1.0	21	43	488	510	485	521	0.88

Sequence Information

Coding Sequence: ATGAGAATAACACATGCTGTAGAAAAGCCATTTGCTTGCGACGAATGTGAAATGAGATTTGAGGACAACGACGAGTTCAAAAAACACTTGCAAACCCACGTAGAGCAAAAGCCATTTATCTGTGACACATGCAATGCCGTGTTTCAAACTGAAAACAATTTGAAACAACACATGATTATTCACAGTGGAGAAACAACATTTATAAATGATGAGAAAATTAGAAAACTTCACACAAGAGTAAAGCCGTTTGCCTGCGTGCTATGCAATAAGAGATTCGGATGGAAATCTCATTTAAAAACACATATAATGGCAATTCACACCGGAGAAAGACCATTTTCGTGTACGAAATGTGATAAAAAATTTACACAAAGAAGTTATTTAAAAGCGCACATGCTAACCCACAGTGACGAGAAACCAACGTGTACTGTATGTAACAAAGTATTCCAAACAGAAATCAACTTGAAAAAACACATGTTTATTCACAGTGGAGAAACTTCGTTTATAAAAGAACATGTTGATGATGGAGCTCTGAGCGGAGAAAAGCCATTTGCGTGTATTATGTGCAGTAAAACATTTGGATGGAAGTCTCATTTAAAAACTCATATTATGGCTATTCACACTGGAGAAAGACCATATGCATGCGCGATTTGTGACAAAAAATTCACCCAACGCAGCAATTTACGAGCTCATATGGGATCATCACACTCCGGTGAGAGATATGCATGCGATCGTTGCGATAAATCCTTTAACACAGGCAGTAATTTAAGAGTGCATATGAGAgttcacactggagaaaagccctTTCAATGTACCAGATGTGACAAAACATTCAAACGAAACGAGTCATTAAAAATACACCTGCAATCACACGGAGAAAAACCGTTTACGTGTAAACTATGTTTGGAGAAATTTAGCTCTAAAATTCATTATGAAACGCATATGAAACTGCACACAAGCGATTTGCCACCTTTTCTCTGCctcaaatgtaataaaaaattcGATGTCAAAAGCGATTTGGAATCGCACATAAAAATTCACGATGAAGATATGTTTGCTTGCGACAAATGTGATTTAAGATTTGATGATAAATACAGTTTAAAGAAGCACAGAACTCTGCACAACGACGATAACCCTCTTACTTGCGAGACATGCAATAGAACATTCCACGCCAAGTCTATTCTCAGACGTCATATGTTCATACATAGTAATGAAAGGCCGTACCCTTGTCGAATATGCAACAAAAGCTACAAGCAAGaacgaatattaaaaaaacacatggAAATACACACAGAAGAAAAACAATTCGCCTGTGACATATGCGATAAGAAATTCTACCAAAAATGCAACTTGATGGGCCATATGAGAATTCACTCCGGAGAAAAGCCATTTGTGTGTGACCGGTGTGGAAATAGCTTTAATCAGAAAAGCCATTTAAGAACTCATATATTGTTTATGCATACTGCAGAGAGGCCATATGCCTGTGATATTTGCAACAAGCGATTTAGACTTAAAAGTTGTTTGAGGAATCATAGAATGGTGCATACGGGAGACCGGCCATATCCCTGCGACAAATGtgataaaaagtactataagaaACGGGAACTTAAAACTCATGTTATGAAAATGCATACATAA
Protein Sequence: MRITHAVEKPFACDECEMRFEDNDEFKKHLQTHVEQKPFICDTCNAVFQTENNLKQHMIIHSGETTFINDEKIRKLHTRVKPFACVLCNKRFGWKSHLKTHIMAIHTGERPFSCTKCDKKFTQRSYLKAHMLTHSDEKPTCTVCNKVFQTEINLKKHMFIHSGETSFIKEHVDDGALSGEKPFACIMCSKTFGWKSHLKTHIMAIHTGERPYACAICDKKFTQRSNLRAHMGSSHSGERYACDRCDKSFNTGSNLRVHMRVHTGEKPFQCTRCDKTFKRNESLKIHLQSHGEKPFTCKLCLEKFSSKIHYETHMKLHTSDLPPFLCLKCNKKFDVKSDLESHIKIHDEDMFACDKCDLRFDDKYSLKKHRTLHNDDNPLTCETCNRTFHAKSILRRHMFIHSNERPYPCRICNKSYKQERILKKHMEIHTEEKQFACDICDKKFYQKCNLMGHMRIHSGEKPFVCDRCGNSFNQKSHLRTHILFMHTAERPYACDICNKRFRLKSCLRNHRMVHTGDRPYPCDKCDKKYYKKRELKTHVMKMHT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01183118;
90% Identity: iTF_01183118;
80% Identity: iTF_01183118;