Ptra021098.1
Basic Information
- Insect
- Philereme transversata
- Gene Symbol
- Prdm9
- Assembly
- GCA_963924445.1
- Location
- OZ004347.1:14034506-14044961[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.00021 4.1 8.7 0.1 21 44 378 401 367 405 0.87 2 7 0.0012 23 6.3 0.0 21 44 406 429 401 433 0.90 3 7 0.00053 10 7.4 0.0 21 46 434 459 430 465 0.86 4 7 0.00087 17 6.7 0.1 21 46 462 487 458 493 0.86 5 7 0.0038 75 4.7 0.0 21 44 490 513 486 517 0.89 6 7 0.0038 75 4.7 0.0 21 44 518 541 514 545 0.89 7 7 0.27 5.3e+03 -1.3 0.0 21 45 546 570 543 577 0.80
Sequence Information
- Coding Sequence
- ATGTCTCGACGCTATTTGCGGCAGATGCCGCGATTATGCTACTTCGAACCTGAGGAACCTGATTTAGATGAATATGTGTTCTGTGAAAAATGCGAAGACTATGTGTACGAGTACTGCTCCATACATGGACCGCTGTTAGTAATACCAGATGATAAGGTCCACCCCAAACCAAACGTCCCATCGTTTGTGCCTCGCGCGGCGCTCACCATTCCCCACGTGTTCCTGCATATCTCCTATTCCATTATACCAGGTGCCGGTCTCGGCGTGTTTTCATCGATGACCCTTCCTTCTGGAGTGCGCTTCGGGCCTTACTGCGGAGAACTCACTGATGGGGCCGGCGATTCTTCATACTGTTGGCAGATATACGACAAGGAGCGCAAGCCGCTACACTGTGTAGACGCGGCGGACGCGAACAAATCCAACTGGATGCGGTACGTGAACTGCGCGCGGCACTGGTGTGAGCAGAATCTGGTGGCGTACCAGTACCAAGGAAAACTCTACTACAGAACGATCAAAATAATACCTCGTTTTACGGAGCTGCTTGTGTTCTACGGCAGCGAGTTCGCGTGCGAGCTGGACGTCGACCTCAGCAACTACAACTCACCGCCCGGATACGCACAGAAATACGgtGCACCCATCGCTAAGAAACATAAACCGCTAACCACCGAAACTACCGATTTGACAGCCGAAGCGCAGAATAAACAAGTAGTACTTACTTCACAAACAGACGAACATATCGAGCCTACAAGTAATGTTACCAATAAGAAAAGGTCCATAACATTTGCAGCACCTAAAAAGATAAAAACCAAGGACAATAACGAAAGCAAAAACACGAGAACCATAAAAGCTGCTATTGAAACAACTATAGTCAAACCAAACACTCCTAATATTAAGATAtcggaaaataaaaaaacaaatctaggtGGAGAAGAGACGAAAGCGAGCCATGGACCGAACAATGCAGCGGATTTTTACATCTATTGTCATTATTGCAATAAGAAATTTATAACAAAGCAAGATCTGCAAAAACATCTCAGGTTCCACGATCCTGAACGGGCATATGCATGTGACGTATGCAAGCTACGGTACGATTTATTGCCAACTTTAAAAATGCATATGAGGACGCACACCGGTGAAAAGCCGTATGCCTGTGAAATATGCGATAAAACATTTAATCAGAACTGTAATTTAAAAAAGCATACGAGGGCGCACACCGGTGAAAAGCCGTATGCCTGTGAAATATGCGATAAAACATTCAATGATAACTGTAATTTAAAAAAGCATATGAGAACGCACACGGGTGAAAAGCCGTATGCCTGCGAAATATGCGATAAAACATTTAATCAGAACTCTGATTTAAAAAAGCATATGAGGACGCACACCGGTGAAAAGCCGTATGCCTGCGAAATATGCAATAAAACATTCCGACGGAACGGTCATTTAAAATATCACTTGAGAACGCACACGGGTGAAAAGCCGTATGCCTGCGAAATATGCGATAAAACATTTAACCAGAACAGTGCTTTGAAAAGTCATATGCGAACGCACACGGGTGAAAAGCCGTATGCCTGCGAAATATGCGATAAAACATTTAATCAGAACAGTGCTTTGAAAAGTCATATGCGTACGCACACGGGTGAAAATCCGTATGCCTGTGAATTATGCGGTAAAACATTTAATGAGAACGGTAGTTTGAAAAGTCACATGAGAACTCACACCGGTGAAAAGCCGTATGCCTGA
- Protein Sequence
- MSRRYLRQMPRLCYFEPEEPDLDEYVFCEKCEDYVYEYCSIHGPLLVIPDDKVHPKPNVPSFVPRAALTIPHVFLHISYSIIPGAGLGVFSSMTLPSGVRFGPYCGELTDGAGDSSYCWQIYDKERKPLHCVDAADANKSNWMRYVNCARHWCEQNLVAYQYQGKLYYRTIKIIPRFTELLVFYGSEFACELDVDLSNYNSPPGYAQKYGAPIAKKHKPLTTETTDLTAEAQNKQVVLTSQTDEHIEPTSNVTNKKRSITFAAPKKIKTKDNNESKNTRTIKAAIETTIVKPNTPNIKISENKKTNLGGEETKASHGPNNAADFYIYCHYCNKKFITKQDLQKHLRFHDPERAYACDVCKLRYDLLPTLKMHMRTHTGEKPYACEICDKTFNQNCNLKKHTRAHTGEKPYACEICDKTFNDNCNLKKHMRTHTGEKPYACEICDKTFNQNSDLKKHMRTHTGEKPYACEICNKTFRRNGHLKYHLRTHTGEKPYACEICDKTFNQNSALKSHMRTHTGEKPYACEICDKTFNQNSALKSHMRTHTGENPYACELCGKTFNENGSLKSHMRTHTGEKPYA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01183130;
- 90% Identity
- iTF_01183130;
- 80% Identity
- iTF_01183130;