Ptra004844.1
Basic Information
- Insect
- Philereme transversata
- Gene Symbol
- -
- Assembly
- GCA_963924445.1
- Location
- OZ004338.1:34983043-35000252[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.5 2.5e+02 3.5 0.4 2 23 6 27 5 27 0.96 2 13 3.2 3.1e+02 3.2 0.0 1 23 1100 1122 1100 1122 0.94 3 13 5.5e-06 0.00054 21.3 0.8 2 23 1125 1146 1124 1146 0.96 4 13 0.0022 0.22 13.2 2.4 1 23 1152 1174 1152 1174 0.98 5 13 0.012 1.2 10.8 4.9 1 23 1180 1202 1180 1203 0.96 6 13 3.9 3.8e+02 2.9 0.8 5 23 1216 1234 1214 1234 0.96 7 13 0.022 2.2 10.0 1.1 3 23 1241 1262 1240 1262 0.96 8 13 0.006 0.59 11.8 0.2 2 23 1279 1299 1278 1299 0.97 9 13 0.00025 0.024 16.1 0.5 1 20 1305 1324 1305 1327 0.91 10 13 0.0059 0.58 11.8 2.0 1 23 1335 1357 1335 1357 0.99 11 13 0.0065 0.63 11.7 7.2 1 23 1363 1385 1363 1385 0.98 12 13 8.9e-06 0.00087 20.7 1.1 1 23 1391 1415 1391 1415 0.97 13 13 0.00058 0.057 15.0 5.5 1 23 1421 1443 1421 1444 0.96
Sequence Information
- Coding Sequence
- ATGGATCCTCTCGTGCAGTGCCCCGTGTGCACCCTCTTCCTGCACAATGGAATGACTCTAGAGTCCCATTTGGACACTCATCCCAAAGATCAAGTCATCAAAGCTCTCTGTAGCATCACCAAAACAAACACCAGCTGTGTTAGCAGTAGAACCCCTACTCCTGCCAATTCCGAGAGGTCTTACAGGAGCAGGTCTAGAACGCCTATCACTGAGGATAGTGCCACCAATCCTTGGAGTGGAAATAAAGATCATGAACGCTACTGGGCTAGGACCCCGAGTGGAACCTCCAGCAGGACCCCCAGTGGATCCAGCCGAGGGGTCAGCCGGACACCCAGTAGGACTCCAAGCAGAACTGCCAGATCTGTCTCATCAGCCAATGTTTCAAGAAACTGCACTCCTGATATGAGATTGGTTGATAATTTAGCATTTGAAACTACAACAGTCAGTAGTTCATCACAAAACTCACAATCTCGCCAGTCTAACTCACCTTTACCGATAAAACCGGATAAAAGCCAGCGACCCTACCCACCAGCTGCAATATCAGACTATGATCAGCAGTACATGGACTACTCTGACCAGCCCGAGGACCGAGAAGTGAAGTATTCACGAAGTGCTGAGTATAATGCTCTGGATCTTAATAACATGTATGCTTACAATGTGCCAATGCTAGGGGTGGGTGCTAAAATGCCACCATTGCCACCTCATATGAAGAGAAATGAGCCTGTCAAGGCTGGCACTATGAAGTCAAACAACTTACTTAACCTtgttaaaaataacataaatggaATGCAGTGTTTACCTTCTTATTTGGGTAACCGTAGTGCACCGTACCAGATGGTGCCCAATGCACCAGCTTTTGTTCAGAAGAATGTGCAGAATAGTATGATAATGGCCAGTGGTCTACCTAATACCCAAGTTCAAATTGAAACCAAAAGTGTGCCTCCAATAGTTCAAAACCATTTCAACTTGCCTTCTGGTACTTTCACCCCAGGTACCACTGTGGTCACTCAGAATTCCCAGTACTTTTATCAAGAAATGGTGCAAAACATTGATCCTAAATCCTTTGTTCCTACAATGCCTCCTGTTTTTACAGGTCATGAGAATATAACTAATGTTGCTCAAACAAGCTCGGAATGCACAAGAATGTATCAGAATGTGATGCTTGTGGATCAGTTTGGGAATACTTCCTGTATGTACACACCACAGCCGATGCTACCGAAAGCTCCTCCATTATTTGCGGAAAGTAGTTCTCGAACAGTCAATACATTTGTGCAAAAACCAGGTCCAATGAAGAAAGATCCAAACAAGACTCTAATCATTGAAGTGGGACCCATACTGCCTCCACAGAGAACAAGCTCCCGGACTTCAGCCACCAACACTGTGATAGCACAACCTAGGGCTTCTATACCCAATGTTCCTATAATCTCGCCGCCTAAACCTGAGGCTCCCAATATTTCCATAACTGAAAAAGTTGAAAAACCTGAAGCACCGGGCACAACAAGAGGCCTCAAAATTCTAAGCAATATCAAAGTGGAAGTTCCAGTGCAACACATCAAGAGCATGATAAACACTGTGCTAGACCTGACGGGATCCAATGATGCGGTGTACCCGGACCGGAGCAAGACTCCAGAAAAGATCCTGCCGGATTTAGATACCAAGGAAATGGTGAATCACTTCGCGCAACCCTCGACGGTAGGCGAGAGTTCCCACTCGTTTTCTGAACTGAAAAAGTTCTCAAATGCTACCTCAAACAAAGACTTATCTAGTAAAACTAGCAGcctagaaaataaattagagaCGGATTTTGGCGATAGTTGTCCTGTGCCTGATTTAATTTGTAACGAGAAGCCTTCCATCTCGCCGTGCAGCGAATTGTCTGAGAGCGGTGACAACTCCGTCGACCGCACCTCCGTTTCCCCCAAGCCACACACCAGCGGAGTCTCCATGAGAAGAGACGACCTTGATAATAAAAAGAAAGCACCAATGAAAATAAGACTGAACAACATTTTCGTCAGAAAGAACAAAAAGATCCTACAGATCAGAAACGCTAAAGCGACGCATGTGAACCGATGCGAGATCATTCCTATCGCTTGTTCCTCGAAAAGTGTAGCGCCTGAGAATTTTGCGGCTGTAGTAGCTTTATCTCCAAAGCGAAACGAGAAGTCAACACTTAAGACTATTTCCATCGAAGAAATAAAGGGGAAAGAGGAGACTAGCTTTGAAGAAATGGATACAGTAGTAGAGGAGGTGAAACTCCCGCCTGCGCCGCCGGCTAAATCCGAGGTCGCAGTCAAAGAGGAGTTCAATTCTAGCAACGAGTGTGCGTTTAGTAACGAGGCTCCCGGACCCGCTCGGGGATTAGGCCCGCTTGACCCCTTACGGCCCATCACCGTCAGCTACGGCAGTATGTCACCTACTGACTTCGACGACGAATCCAGTAACCGAGAGCTATTAGACCTCGAAGGCGGGAAGAATAAGCAATTCGTAAATATGATGAACGAAAACTACTTCGGCGATAACATTTACGCGGATTACTTTACTGCAGACAGAGTTGAAGCCTTCGACGATAAAGGTCCGACGGTCTTCAAAGATAACTCGAAAGAACCTTTCTCGTGTAGCATTTGGGGAGAACCGTCCTCGAAGGAGAATGAGTTTGTTTTGCCCAATTTTATTCATGAAAGTTATAAGATCGCAGAGAATGGGGTTGACTATGGTGATGGGGGGGATGTTAGGGGGGATAGTAAGGCTGATGTTTCGCCGCTGAATATATGCGCGGATGAGCGTATGCCGCCGCGGGGCGAGCTCAGCGGACAGGAGAGTAATGGAGATATGGAGTCTTCTTGGAATGGAaTGTATCCGGAAGTGACCCCGGCGGAGCCCTACGACCTGATGGCTCGCGAAAGTTGGGTCTCAGACGGATCAGAACTTGATGTTACTGAGAAGAGGGACACATTGGAGGAAGAGCTGGTATTCCCCAAAGCGCGGCTGTACGCCTGCCTCACATGCGGCAGCAAGCACCCGTCGCTCAAAGAGCTGCGCGCGCACAAGGCTTCCTCGCACGTGTCCCAGACGTGCGCCAAGACGTCCTACAGCCGCCTGCTCACCGCGCGCGCTATCAAGAGAGAGGAGAAACCAGACCTTTCTTGCGCAGCGAACCTCCTTGCAATCGATACGAAAGGCAGCATAACGTCGACCATCCTGCAAGTGTATGACCCGGAATCGATAGAAGAAGCTAAGCCGAAGCTCGGAAACCTGCGAGGTCTACTCGGCAAGGAAGGCAAGCGGAAACGTAGGGACTTTGTTTGCCCCACTTGTAAAGTAGACCAgGTGACAGAGCCGGCCTTCACAGCGCATCTCAAGATCCATCCTCTGGAATGCCTCACTTGCGGCAAGTTTTTCTCGCGGCGTGCCAATCTACAGCTGCATGTCAAGACTCATCTGGGACTTAAGGAATACAAATGCGACATCTGCGAGAAGCGGTTTATGACGCGTCAGAAGCTGGGTGAGCATCACAACATCCACACGGGCCGGTCGCCGTACAAGTGCACCTTCTGCGACGACACCTTCCGGCGCTACTCCAACATGGTGCAGCATCGCGACCGCCACCACCTCCACAAGCGAGTGAAAACCCGCGACTACGTTTGCCACTGCGGCGCCATCTTCCAATCTCGCGCCAAGTACCTCTGGCACAAAGAAACGCACGCGGACAAACCCAAAGCCTGCCTGTACTGCAGCGACAAGTTCGTGCACGCGGCTTCACTCACCAGACACGTGCGACGCTCTCACAACGAGCTTTACCTGTCTCAGAACTCCAGGAACAAGAATGATAACGTCACGTGTCCGATATGCAAGCAGGTATACCTCCGCACGAACCTCCGCGCCCACCTCCTCACGCACAGCGGCAAGCGTCCCTTCGCGTGCGTCGTGTGCAACAAGGCGTTCACCACCAAGTGGAACCTCAAGCTGCATCGCTGGACGCACATGAGCCGCTCCGCCAAGCCGTACAAGTGCTCGCTGTGCAAGGGCGCCTTCATCCGGCACACGGAGTACGTCTCGCACATGAACTCGCACAAGTCGGTGCGTCCGTACACGTGCAACTACTGCGGCTGCCAGTTCATCCGCAAGTACAACTGCCAGAGACACGTTAGAGAACACGAAATGGCGAAGAAGTTCGTGTGCAACGTCCCGGAATGCGGCAAGTCCTTCCATAGAAGTTATTATCTATCGGAACACATGAAGGTTCACAGCGGCGTCCGGCCGTTCTCGTGCGATATCTGCGATAAAACATCGAGCAATAAATCCAATCATAATAAGCATATGAAGATACATCACGCTAGGGAATTGGTCGCGTCGGAGGCCTAG
- Protein Sequence
- MDPLVQCPVCTLFLHNGMTLESHLDTHPKDQVIKALCSITKTNTSCVSSRTPTPANSERSYRSRSRTPITEDSATNPWSGNKDHERYWARTPSGTSSRTPSGSSRGVSRTPSRTPSRTARSVSSANVSRNCTPDMRLVDNLAFETTTVSSSSQNSQSRQSNSPLPIKPDKSQRPYPPAAISDYDQQYMDYSDQPEDREVKYSRSAEYNALDLNNMYAYNVPMLGVGAKMPPLPPHMKRNEPVKAGTMKSNNLLNLVKNNINGMQCLPSYLGNRSAPYQMVPNAPAFVQKNVQNSMIMASGLPNTQVQIETKSVPPIVQNHFNLPSGTFTPGTTVVTQNSQYFYQEMVQNIDPKSFVPTMPPVFTGHENITNVAQTSSECTRMYQNVMLVDQFGNTSCMYTPQPMLPKAPPLFAESSSRTVNTFVQKPGPMKKDPNKTLIIEVGPILPPQRTSSRTSATNTVIAQPRASIPNVPIISPPKPEAPNISITEKVEKPEAPGTTRGLKILSNIKVEVPVQHIKSMINTVLDLTGSNDAVYPDRSKTPEKILPDLDTKEMVNHFAQPSTVGESSHSFSELKKFSNATSNKDLSSKTSSLENKLETDFGDSCPVPDLICNEKPSISPCSELSESGDNSVDRTSVSPKPHTSGVSMRRDDLDNKKKAPMKIRLNNIFVRKNKKILQIRNAKATHVNRCEIIPIACSSKSVAPENFAAVVALSPKRNEKSTLKTISIEEIKGKEETSFEEMDTVVEEVKLPPAPPAKSEVAVKEEFNSSNECAFSNEAPGPARGLGPLDPLRPITVSYGSMSPTDFDDESSNRELLDLEGGKNKQFVNMMNENYFGDNIYADYFTADRVEAFDDKGPTVFKDNSKEPFSCSIWGEPSSKENEFVLPNFIHESYKIAENGVDYGDGGDVRGDSKADVSPLNICADERMPPRGELSGQESNGDMESSWNGMYPEVTPAEPYDLMARESWVSDGSELDVTEKRDTLEEELVFPKARLYACLTCGSKHPSLKELRAHKASSHVSQTCAKTSYSRLLTARAIKREEKPDLSCAANLLAIDTKGSITSTILQVYDPESIEEAKPKLGNLRGLLGKEGKRKRRDFVCPTCKVDQVTEPAFTAHLKIHPLECLTCGKFFSRRANLQLHVKTHLGLKEYKCDICEKRFMTRQKLGEHHNIHTGRSPYKCTFCDDTFRRYSNMVQHRDRHHLHKRVKTRDYVCHCGAIFQSRAKYLWHKETHADKPKACLYCSDKFVHAASLTRHVRRSHNELYLSQNSRNKNDNVTCPICKQVYLRTNLRAHLLTHSGKRPFACVVCNKAFTTKWNLKLHRWTHMSRSAKPYKCSLCKGAFIRHTEYVSHMNSHKSVRPYTCNYCGCQFIRKYNCQRHVREHEMAKKFVCNVPECGKSFHRSYYLSEHMKVHSGVRPFSCDICDKTSSNKSNHNKHMKIHHARELVASEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00267528;
- 90% Identity
- -
- 80% Identity
- -