Ptra013580.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Philereme transversata
Gene Symbol
-
Assembly
GCA_963924445.1
Location
OZ004343.1:10701756-10720585[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.00011 0.011 17.2 0.1 3 23 128 148 127 148 0.97
2 18 1e-06 0.0001 23.6 1.2 1 23 154 176 154 176 0.99
3 18 6.4e-06 0.00063 21.1 2.7 1 23 182 204 182 204 0.99
4 18 4.2e-06 0.00041 21.7 2.6 1 23 219 241 219 241 0.98
5 18 0.0001 0.01 17.3 0.6 1 23 256 278 256 278 0.98
6 18 5.9e-05 0.0057 18.1 3.1 1 23 293 315 293 315 0.98
7 18 4.1e-07 4e-05 24.9 1.5 1 23 330 352 330 352 0.99
8 18 0.00082 0.08 14.5 0.0 1 23 359 381 359 381 0.97
9 18 1.2e-06 0.00012 23.4 2.3 1 23 387 409 387 409 0.99
10 18 0.041 4.1 9.1 1.8 1 23 416 438 416 438 0.98
11 18 6.9e-07 6.8e-05 24.2 2.3 1 23 444 466 444 466 0.99
12 18 0.048 4.7 8.9 1.8 1 23 473 495 473 495 0.98
13 18 2.8e-06 0.00028 22.3 1.5 1 23 501 523 501 523 0.99
14 18 0.00053 0.053 15.1 0.7 1 23 530 552 530 552 0.99
15 18 3.1e-06 0.00031 22.1 1.9 1 23 558 580 558 580 0.98
16 18 0.0023 0.22 13.1 0.3 1 20 586 605 586 608 0.93
17 18 4.4e-05 0.0043 18.5 1.4 2 23 615 636 614 636 0.96
18 18 4e-06 0.00039 21.8 1.4 1 23 642 665 642 665 0.97

Sequence Information

Coding Sequence
ATGTTCGAACAGCAAATCAAAGCTGAACCCATGAGTTTCTACCACCCTCACGTTACTCATGTTCACCCCGGTCCCCCAACGATAGGGCGTTCAGAGTCAAACCACCACCTTATGAACCCCCATCACCACCCAGAAGACTCAAAAGACAGCCTGATAGTACAACATCAAGTACAACACCAGCAAGATCTCATGGATCAACACCAGCAGCAGGAAATGCAACAAGATGATGAGCTGAGCTTCAAAGGCATGGAAGATGAAGGTGTTGACATGGATATGGACGGCAGACAGTGTTCACAGGGCATGGGAGTAGACATGGGGTCCGTTCAAACAAAAATGGAGGTAAACGGAGGCCAGTCAACACCTCGATCTAAACCACAAGCCTGTAAGGTTTGCGGCAAAGTTCTTTCGTCCGCTTCATCATATTACGTCCACATGAAGCTTCATTCTGGAAACAAGCCTTTCCAATGCACAGTTTGCGACGCAGCTTTTTGTCGGAAGCCATACTTGGAAGTCCACATGCGCACCCACACGGGCGAGCGTCCGTTTCAGTGCGATCTTTGCCTGAAGCGCTTCACACAAAAGTCCAGTCTCAATACGCACAAACGGGTGCACACAGATGAGCACTTGCACGCGTTGGTGGCGAAGGACCGGCCCTACAAGTGTGAGCTCTGTCAGATGCGGTTCACGCAGAGTTCCAGCCTCAACagacacaagaaaatacacacGGAGGAACACAGACGCGGACTGCTGGTCAAGGATCGGCCCTACCAATGCGGCATCTGCTTTGTGCGATTCACCCAGAAATCGAGTTTGGGCCGGCACGGAAAGATACACACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTCGGACGTCATGGGAAAATACACACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGTCCGTATCAATGCGACATCTGTGACAAGCGGTTCACGCAGAAGTCCAGCCTTGGCACTCATAAGCGTATACACACCGTGCAAGGGCGTCCTTTCGCGTGCGGGCAATGCCCGGCGGCGTTCGCCCGTCGCCCCTACCTGGACATTCACTTGCGCACGCACACAGGCGAGCGGCCCTATCAGTGCGACGTGTGTCTCAAGCGCTTCACGCAGAAGTCAAGCCTCAATATACATAAGCGGACGCATTCAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCCGCCGCCTTCACCTGCAAGCAATACCTGGAGATACACACGCGCACGCACACCGGCGAGCGGCCCTATCAGTGCGACATCTGCCTGAAGCGCTTCACGCAGAAGTCCAGTCTCAACATCCACAAGCGGACGCACTCAGTGCAAGGCCGGCCCTTCCAATGCCTGCAATGTCCTGCCGCCTTCACTTGCAAGCAGTACTTGGAGATCCACAACCGCACGCACACGGGTGAACGCCCCTACCAGTGCGATGTGTGTCTCAAGAGATTCGCGCAAAAGTCTACACTCAACATTCACAAACGAACGCACACAGTGCAAGGGCGGCCGTACCAATGCATGGAGTGCCCGGCGGCGTTCACTTGCAAGCCGTACTTGGAGATACACATGCGCACGCACACTGGGGAGCGCCCCTTCGAGTGCGATGTCTGTTACAAACGCTTCACGCAGAAATCCACGCTCAACATTCACAAGAGAATACACACGGGTGAGCGCCCATACGCTTGTGATATCTGCCAGAAACGTTTTGCTGTGAAGAGCTATGTAACAGCGCATAGATGGTCACACGTTGCCGATAAGCCGTTGAACTGCGACCGATGCTCGATGACGTTCACTTCCAAGTCCCAATTCGCGCTGCACATCCGCACACACACGGCGGGCCCGTGCTACGAGTGCAGCGTTTGCGGACGCACCTTTGTGCGAGACAGTTATCTTATACGtcacCACAACCGCGTGCACCGCGATAACCACAGCAACGTGTCGGCGAATAGCATCGGAAATCTGAACAGTGTCGCCACCAACACCAACAACTCGAACAACGGCGGCTTCGACTCCCCCGGCGTCTGCGATTTGAGCTTCGTTCCGATGGTGAACCGTTATATGACGTCGCAAGGTACTCAGGTGTCCATGCAAGACGCCCAGAAGATGTCTGCCATGTCGCCCCAATCGATTGCATCTATTTcatCGCCCCCTCCACCTCATACACCGACGCCCCAACCCCAGATGTCGGGTCCGCTGCACATGGCAGACTGA
Protein Sequence
MFEQQIKAEPMSFYHPHVTHVHPGPPTIGRSESNHHLMNPHHHPEDSKDSLIVQHQVQHQQDLMDQHQQQEMQQDDELSFKGMEDEGVDMDMDGRQCSQGMGVDMGSVQTKMEVNGGQSTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHLHALVAKDRPYKCELCQMRFTQSSSLNRHKKIHTEEHRRGLLVKDRPYQCGICFVRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTVQGRPFACGQCPAAFARRPYLDIHLRTHTGERPYQCDVCLKRFTQKSSLNIHKRTHSVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRTHTAGPCYECSVCGRTFVRDSYLIRHHNRVHRDNHSNVSANSIGNLNSVATNTNNSNNGGFDSPGVCDLSFVPMVNRYMTSQGTQVSMQDAQKMSAMSPQSIASISSPPPPHTPTPQPQMSGPLHMAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00686557;
90% Identity
iTF_00737671;
80% Identity
-