Basic Information

Gene Symbol
nfxl1
Assembly
GCA_033558755.1
Location
JAKGSA010000676.1:35165-37639[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 2 2.4e+04 -7.8 5.6 15 19 134 138 133 138 0.81
2 18 0.01 1.2e+02 3.2 0.3 4 10 169 175 168 176 0.97
3 18 3.1e-07 0.0036 17.6 15.9 3 19 186 202 185 202 0.95
4 18 3.8e-06 0.045 14.2 12.0 3 18 239 254 237 255 0.91
5 18 9.1e-09 0.00011 22.5 10.2 1 19 290 308 290 308 0.98
6 18 1.6e-06 0.019 15.4 15.6 3 19 345 361 337 361 0.86
7 18 1.2 1.5e+04 -3.4 0.4 7 11 365 369 365 369 0.84
8 18 0.00012 1.4 9.4 20.2 1 18 395 412 395 413 0.97
9 18 1.1e-07 0.0013 19.1 16.3 1 19 422 440 422 440 0.99
10 18 0.42 5e+03 -2.0 1.3 5 10 468 473 468 473 0.92
11 18 0.0062 73 3.9 10.9 10 19 489 498 486 498 0.90
12 18 0.016 1.9e+02 2.5 7.4 4 12 510 518 508 518 0.90
13 18 0.37 4.4e+03 -1.8 3.3 14 18 547 551 547 552 0.85
14 18 0.11 1.2e+03 -0.0 0.6 7 12 567 572 567 579 0.82
15 18 9.6e-06 0.11 12.9 4.8 1 11 588 598 588 599 0.97
16 18 0.00037 4.4 7.8 16.9 3 18 629 645 628 646 0.82
17 18 1.3 1.5e+04 -3.5 1.6 6 10 677 681 676 681 0.88
18 18 2.4e-07 0.0028 18.0 11.0 1 16 687 701 687 707 0.91

Sequence Information

Coding Sequence
ATGGCTAGACGATATCGTGATGCTGCTGCGAAATTGCAGCAAAACGTCCAGAAACATCTACAGGTGATGAAGGAACTGTCTTCCTCTGAAGATGATGAGCCAGTCGAGTCAGGTGTCCTGGATAGTGTGTTCCAGAGCTACTGGCGAGGCGGCGGGGATGTACAAATGCTTAACAGGACTAAGCACCTTCTAGAGGAGGCAATGAGTGGTCGAGCGGTGACATGCTTAATTTGCATTGGATCTATTAAAAGAACCGATGCTATATGGACGTGCGATCATTGTTATTGCTATTTCCATCTTTCTTGTATACAAAAATGGTCAAACGATAGTATAAGCCTTCGCAGTGAAGAAAATCATGGCCCAATTGCTGTGTTTATgcctaaaaaaattgaatggtGCTGTCCGAAATGTAGAAATTCCTATAATAAAGAGGAAATACCACGTAAATATCGCTGCTTCTGCAATAAAACTGATAACCCTCCCTTCCATCCCTGGTTAATACCTCACACTTGTGGAGAAGTGTGTGGAAAAAGGTTGTCAGTAGGTGATAATTGCAAGCATAAGTGTCTTTTATTGTGTCACCCAGGGCCCTGCCCTCCATGTCCTCAAACTGTGAATGGGGCTTGCTATTGTAACAAGGAGCATAAAAGAGTAAGATGTAGTGCTGCGCACTGGTCATGTAGGCAACGGTGTAACAAAAGTTTACCTTGTAAATCTCACAAATGTGAGGATGTTTGCCATGCAAATGAATGCCCTCCTTGTAATTATACAAGTTTGCAGTTATGTCAGTGTGGAGCTGAAAAAACAAAACGCCCCTGTAACAGCTTGGTATGGCAGTGTGATAAAAAGTGTAATAAGCAATTTGCATGTGGTTTTCATAAATGTGACAGAATATGTCATAGTGGAAACTGTGGACTTTGTCCCAATTCAGGAGTCAGATCTTGTCCCTGTGGAGCAAACCAGAGATACATTCAATGTCCTGATACTATTGAAACTTGTCTTGGAACATGTGGAAAGAAATATGAAGATTGTGAACACAACTGTCCAGCTAAATGCCACAAAGGGTCATGCCCTCCTTGTCAAGTGCAGATAGAAAAGAAATGTCACTGTTCAACTCATACTAGACCGCTGCCATGTAGCAAAGAATTTAGGTGTGAGACTAAATGTAGAGGCATCAGACCTTGTGGTAAACATGGTTGTGGAAGAAAATGCTGTAATGGCAGCTGTCCCCCATGTGAGAAAGTTTGTGATAAGTCATTGCAATGTGGCCGACATAGATGTGGTATGATATGTCATCATGGGCCTTGTTACCCTTGTCCTCTTGAATCTAAAGTGACTTGTCGCTGCAAGGAGACATATGTAACGGTTCCTTGTGGAAGAGAGAGACATACACGTCCACCTAAATGTAATCAACCATGTAAACTCAAATATAAATGTGGCCACATAGAAGAAAACAAACATTGCTGTCACTTTGGTGACTGTCCACCTTGCAAAGCTATATGTAACAAGGTTTATCAGAAATGTGATCATAAATGTACAGCAACATGCCATGAATATGTGCTAGTTACTTTCAAACAGGTAGAAAAGCCTGCCACACCATGGGAGGCTCAGCCGCCAAAATCAAAAATAGTTGCCTTAGAGTGTCCACCTTGTGAAGCTCCTGTTACAGTGACATGTTTTGGAGACCATGAAACAGATGAACAACCTTGTCATAAAGCAAGCCGTCGACCATGTGGCCGAGAATGTGGTAAACCATTAATTTGTGGAAACCATTCATGTGAATTAATATGCCACCTATACAACCATGATCCTGATTATCCAAACGTGCCTTATACATGTAAAGCATGCAACAGAGAGTGTTCTAAAATCCGTCCAAGTAAGTGCACACACAAATGTGCAAAACGCGGTTGTCATCCTGGTCCATGTCCACCTTGTGAGATTATGGAGAGAGTTTCCTGTCATTGTGGTGTCACAGAATTATATTTCCGCTGTAAAGAGCTATCTAACACTAATGAGGAAACACTAAGTTGTAAACAAACATGTCCTAAGAATTTAAACTGTGGGCATCGTTGCAAAGATATTTGTCACTCTGGTCCATGTGGAGTCAACCAAATTTGTACTAAAAAGACTAAAATTCACTGCTCATGTGGAAATTTAAAGAAAGAGGCTCCTTGTTATGCTGTCAGAAATGCAGAAATCAAAATAGAATGTGACTCGAGCtgtgaaacaaaaaaactagCTGCAAAATTAGAAAAAGAACAACAAGAGATGAGATTAAAACAgcaagaagaagaaagaaatcGTAAAGAACTAGAAGAATATGAGTGGAAGTTGAGTGGGAAGAAGAAGAAATACAAGGAGAAAaaggttattgttaataaatatgacaGAAACGTCTTGCAGAAATATTGGGTTCCTATTTTATCTTTAGCGGTTGTAATTTTAGCtgctatttattacattttttatatttga
Protein Sequence
MARRYRDAAAKLQQNVQKHLQVMKELSSSEDDEPVESGVLDSVFQSYWRGGGDVQMLNRTKHLLEEAMSGRAVTCLICIGSIKRTDAIWTCDHCYCYFHLSCIQKWSNDSISLRSEENHGPIAVFMPKKIEWCCPKCRNSYNKEEIPRKYRCFCNKTDNPPFHPWLIPHTCGEVCGKRLSVGDNCKHKCLLLCHPGPCPPCPQTVNGACYCNKEHKRVRCSAAHWSCRQRCNKSLPCKSHKCEDVCHANECPPCNYTSLQLCQCGAEKTKRPCNSLVWQCDKKCNKQFACGFHKCDRICHSGNCGLCPNSGVRSCPCGANQRYIQCPDTIETCLGTCGKKYEDCEHNCPAKCHKGSCPPCQVQIEKKCHCSTHTRPLPCSKEFRCETKCRGIRPCGKHGCGRKCCNGSCPPCEKVCDKSLQCGRHRCGMICHHGPCYPCPLESKVTCRCKETYVTVPCGRERHTRPPKCNQPCKLKYKCGHIEENKHCCHFGDCPPCKAICNKVYQKCDHKCTATCHEYVLVTFKQVEKPATPWEAQPPKSKIVALECPPCEAPVTVTCFGDHETDEQPCHKASRRPCGRECGKPLICGNHSCELICHLYNHDPDYPNVPYTCKACNRECSKIRPSKCTHKCAKRGCHPGPCPPCEIMERVSCHCGVTELYFRCKELSNTNEETLSCKQTCPKNLNCGHRCKDICHSGPCGVNQICTKKTKIHCSCGNLKKEAPCYAVRNAEIKIECDSSCETKKLAAKLEKEQQEMRLKQQEEERNRKELEEYEWKLSGKKKKYKEKKVIVNKYDRNVLQKYWVPILSLAVVILAAIYYIFYI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00214100;
90% Identity
iTF_00621700;
80% Identity
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