Pdid007471.1
Basic Information
- Insect
- Philaethria dido
- Gene Symbol
- -
- Assembly
- GCA_033558755.1
- Location
- JAKGSA010000329.1:1946-9106[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.9 3.5e+02 2.4 0.1 3 23 116 136 114 136 0.94 2 13 0.013 0.94 10.4 0.0 2 23 140 162 139 162 0.95 3 13 0.086 6.1 7.9 0.5 2 23 433 455 432 455 0.97 4 13 0.14 10 7.2 0.2 1 20 463 482 463 483 0.95 5 13 0.014 1 10.3 0.4 2 23 494 515 493 515 0.94 6 13 2.1 1.5e+02 3.5 2.9 1 23 531 554 531 554 0.94 7 13 0.03 2.1 9.3 1.0 1 23 563 586 563 586 0.94 8 13 0.66 46 5.1 1.4 3 23 662 683 660 683 0.90 9 13 0.65 46 5.1 1.0 1 23 688 711 688 711 0.92 10 13 3.8e-05 0.0027 18.4 1.2 1 23 717 739 717 739 0.97 11 13 1.8e-06 0.00013 22.6 1.2 1 23 746 768 746 768 0.98 12 13 7e-05 0.005 17.6 2.3 1 23 773 795 773 795 0.96 13 13 0.0077 0.54 11.2 4.0 1 23 801 823 801 824 0.96
Sequence Information
- Coding Sequence
- ATGGTATCCGACGAGTCAGATGATGAACCGCTATCTAATTTGGCGGCCAAGAAAAATAATGGAGATTATGAATATCAGCCGCCGAGTGATAGTAGTGATGAAGAACCTAGacgaaagaagaaaaaaaaggacCCGCCGGCAAAAAAATTAGGAGTGACAATTAAACTAAATCGAAAATTGAACTCGCTAGTCGGCCCTGCTGTAATAGAGAGACCGTCCGATGTATGGCTTTATTTAAAAGATCTGAATCCTACAGGGCCTTACAGTTGCTTACTATGTTCAGATTGGTTTATAAATCGGTCTAAAATGATTTTACATTATGCTTTAAAccataaaaaagatttttgtgGTATTTGCAGATATTTTGTACCTGACAGGGGTTCCTGGTGGGAACACGAAAAGTTCCATTCACCTTGGCCCTGTTCACAATGTGTGGAAACTTTCCCTACTGATGTCCAGCTACGTGTACATCTCAGCTCCATTCACAATTTAGTCCATTGCCGGCTCTGCCACTTCAGGGTGACAGCCGATGATGATTACAGTTCCCATTTATTCCAAAAACACAATGTTACCAATGCCGCTTGTCAAAATGATGAACAGTTTTGGCAAATAGATTATGATGGAGATGATAAATTTATGTGTTCACTATGTTCAAAGCCAGACTTACTATCGTCAACATTTTTTGCACATTATATGGGCTTTCATCACTTTACCCTCAAATGCTTGACCCATCTTATTGCTGGAAAAAATACACCATTCACTGTGGATGGTGCTGATGTCACTGATCGTTTTGTTAATGAACAGCTAAAAGGACATGTAAGGCTCGGTTATGTGGATTTGACACCAAAGACTGATACACCAaatgttataaaagaaaaagttgTACCAATTGAAATTGTTTTACCTGAAGTTAAACAAGAAATTGTAAGTGACCATGAAGAACAAAACAAGGCACCAGCTCCAGCACCAGCTCCGACCCCAGCTCCACCACCGGTGGCACTACCTGTGCCAGTGCCAGTTCCTGTTACTATGCCACGAGATGACAATGTAGCAAATAATGACAATGTACCAAAAGATGATAATGTAGCTAAAGATGAAAATAGCCAAAGCAGTGATGCTATATTGGATTATAAGGGAAGTGAAGACTATGATGTTACAGTGACAGAAATGATTGTTATTGAGAGATCATACTTTGACTATGTTCATCAATTGATGGTAAGTGTGAGTGAAGATGCAGTGCCACAACTTTCACATATAGAGTATGACAAGCTTAAGTCTGACATGTTAAACAATGTGCAGTGTCCCTTATGTACAACTAAATTGGAAACAGTGCAATCATTTTCAACCCACATGAATAAAGTGCACAGTGTCAAAACTGTACCTCTATATTCCTGCAGAGTGTGTACAGCATTCTTTGACACATATAATGAATTGGCGAATCATACAGCTTGTGAATTtgctgattttgatgatttgtgGATTTGTCAATTTTGTGACAAGGAGTTTGATAACCGTGAAGCAACGAGGCAGCATTTAACAGAGCACTGGACTTATTTAGACTATGAAAATTGCTTTAGTCCCCATATAGGGTTCAAATGCAAATACTGTTCCACATTGTTCTGGAATGAGCATGACAGGGAAACTCATCAGCTAAGAGTGCACTTCCATAAATATAAAGAGCATTTTTACAAGTGTGATGCCTGTGCTAAAACTTTTGGTGACAAGGTATGGTACATCCACCACTATCTAGAGAAGCACTGTGAAGATGAAGACAAGGCTTACCTCGTCAAATGCTGTCTCTGCTGCGTGGTCCTCGACAGCGTTGAAGAGATGAGGACCCATTTTGCCTCCAACCATGCAGAAGTTCGCAAGTTATACTGTTCTTTAGAGCCCTGTATGTACAAGCCTTTGAGCCACAGGAAGTCTTTTAAACTACATGTTAAgATGGTACACGGCACACCAAAACCAGAGAAAACCGTCCATTGCAATGTCTGTCAGAGAGAGTTTGCGAGTGCCCGCGCCTGTTCCACGCATATGGCTCAAATACACGGCCCCGGCAAGTTTAAATGTAAACTTTGTAAGGAAGTGCTGCAGACACTCGATGAGAGAAAACTCCATTACCTTCTTCGTCACCCTGGCCGTCATCCATTCGAATGTGTGGACTGTGGCAAATCGTTCCAATACAAGTCGTCCTTATACATGCATAGACAGGACCACCAGCCCAACAAACAGACATACACGTGCAGTTACTGCGGGAAAACTTTTGcgAAAAAGGACTCGTACCGCGAGCACGTGCAGATCCACGAGGGCCCGCGGCACGCGTGCTCGTACTGCCCGATGCGGTTCGTGCAGCGCTCCAACATGCTGCGGCACGAGCGGCGCCACACCGGCGAGCGCCCCTACCGCTGCGCGCACTGCCCGCGCGCCTTCGCCGACAAGGGCGCCTGCACCGCGCACACCAGGTACCACCACCCCGACCCGCAGTTAGTATTGTGTCTCATCTTACGAGTGTGCAGTGTGCAGTGTGCAGTGTGCGAGTGTCGTTACGTGTCGGTGGCGAGTATGAGCCCTGATAAAGGTCGCCGGGAAAACatggagctcgaattgtaa
- Protein Sequence
- MVSDESDDEPLSNLAAKKNNGDYEYQPPSDSSDEEPRRKKKKKDPPAKKLGVTIKLNRKLNSLVGPAVIERPSDVWLYLKDLNPTGPYSCLLCSDWFINRSKMILHYALNHKKDFCGICRYFVPDRGSWWEHEKFHSPWPCSQCVETFPTDVQLRVHLSSIHNLVHCRLCHFRVTADDDYSSHLFQKHNVTNAACQNDEQFWQIDYDGDDKFMCSLCSKPDLLSSTFFAHYMGFHHFTLKCLTHLIAGKNTPFTVDGADVTDRFVNEQLKGHVRLGYVDLTPKTDTPNVIKEKVVPIEIVLPEVKQEIVSDHEEQNKAPAPAPAPTPAPPPVALPVPVPVPVTMPRDDNVANNDNVPKDDNVAKDENSQSSDAILDYKGSEDYDVTVTEMIVIERSYFDYVHQLMVSVSEDAVPQLSHIEYDKLKSDMLNNVQCPLCTTKLETVQSFSTHMNKVHSVKTVPLYSCRVCTAFFDTYNELANHTACEFADFDDLWICQFCDKEFDNREATRQHLTEHWTYLDYENCFSPHIGFKCKYCSTLFWNEHDRETHQLRVHFHKYKEHFYKCDACAKTFGDKVWYIHHYLEKHCEDEDKAYLVKCCLCCVVLDSVEEMRTHFASNHAEVRKLYCSLEPCMYKPLSHRKSFKLHVKMVHGTPKPEKTVHCNVCQREFASARACSTHMAQIHGPGKFKCKLCKEVLQTLDERKLHYLLRHPGRHPFECVDCGKSFQYKSSLYMHRQDHQPNKQTYTCSYCGKTFAKKDSYREHVQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYRCAHCPRAFADKGACTAHTRYHHPDPQLVLCLILRVCSVQCAVCECRYVSVASMSPDKGRRENMELEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00458435; iTF_00779887;
- 90% Identity
- -
- 80% Identity
- -