Dvan011302.2
Basic Information
- Insect
- Dione vanillae
- Gene Symbol
- -
- Assembly
- GCA_037178615.1
- Location
- JAZFAU010000138.1:1681167-1687351[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.1 2.3e+02 3.6 0.1 3 23 116 136 114 136 0.94 2 12 0.012 1.3 10.6 0.0 2 23 140 162 139 162 0.95 3 12 0.067 7.5 8.2 0.4 2 23 431 453 430 453 0.97 4 12 0.11 12 7.6 0.1 1 20 461 480 461 482 0.95 5 12 1.9 2.1e+02 3.7 2.9 1 23 483 506 483 506 0.94 6 12 0.0013 0.15 13.6 1.1 1 23 515 538 515 538 0.94 7 12 2.6 2.9e+02 3.2 2.0 3 23 614 635 612 635 0.88 8 12 0.58 65 5.3 1.0 1 23 640 663 640 663 0.92 9 12 3.4e-05 0.0038 18.6 1.2 1 23 669 691 669 691 0.97 10 12 1.6e-06 0.00018 22.7 1.2 1 23 698 720 698 720 0.98 11 12 6.2e-05 0.0069 17.8 2.3 1 23 725 747 725 747 0.96 12 12 0.003 0.33 12.5 4.4 1 23 753 775 753 776 0.96
Sequence Information
- Coding Sequence
- ATGGTATCCGACGAGTCAGATGATGAACCTCTATCTAATTTGGCGGCCAAGAAAAATTCCGGAGATTACGATTATCAGCCGCCAAGTGATAGTAGTGAGgatgaacctaaaaaaaagaaaaagaaaaaggaacCTCCGGCAAAAAAGTTGggagtaacaataaaattaaatagaaagctAAACTCCCTTGTCGGCCCGGCTGTAATAGAGAGACCGTCTGATGTGTGGCTTTATTTAAAAGATCTTAATCCAACAGGGCCTTACAGCTGTTTACTATGCTCAGATTGGTTTATAAATAGATCTAAAATGATTTTACATTATGCTTTAAATCACAAGAAAGATTTTTGTGGTATTTGTagATATTTTGTCCCAGATAGGAGTGCATGGTGGGATCACGAGAAATTCCATTCACCCTGGCCATGTTCACAGTGTGTAGAAACATTTCCTACTGATGTTCAGTTACGTGTTCACCTCAGCTCTATACATAATTTAGTGCATTGCCGCCTCTGTCACTTCAGAGTAACAGCTGACGACGATTACAGTTCTCATTTGTTCCAAAAACATAATGTTACCAATGCTGCTTGTCAGAATGATGAACAGTTTTGGCAGGTAGATTATGATGGAGATGATAAATTTATGTGCTCACTATGTTCAAAGCCTGATTTACTGTCATCCACCTTTTTTGCTCATTATATGGGCTTTCATCATTTCACTCTAAAATGTTTGACTCATCTAATTGCTGGAAAAAATACAGCATTTACTGTTGATGGAGCTGATGTTACTGATCGCTTTGTAAATGAACAGCTAAAAGGACATGTAAGGCTTGGTTATGTAGATTTGACACCAAAGACGGATGCACAAAAAGTTGTAAAAGAAAAAGTTGTGccaattgaaattgttttaccTGAAGTTAAACAAGAAGTTGTTAGTGATCATGAAGAGCAAAACAAAGTTGCCCCTCCAGAACCAGACCAAGTACCTGTGCCTGTACCTACACCTACACTTACACAAGCACCTGCAGTCACAGCAAAAGATGACAatgtaccaaaagatgacaaTACACCTAAAGATGATAATGTAGCAAAAGATGAAAATAGCCAAAGTAGTGATAGTATTTTAGATTATAAAGGAAGCGAGGACTATGATGTTACAGTCACAGAAATGATTGTCATTGAAAGATCTTACTTTGACTATGTTAACCAGTTGCTGATAAGTGTAAGTGAAGACACTGTACCGCAACTATCTCACATTGAATATGACAAACTCAAGTCTGATATGTTAAACAATGTACAGTGTCCTTTGTGTACAACTAGACTGGAAACAGTGCAATCATTTTCAACACATATGAATAAAGTGCATAGTGTGAAAACAGTACCTCTGTACTCATGTCGAGTGTGTACAGCTTTCTTTGATACATACAATGAACTGGCAAATCATACAGCCTGgttcaaatgtaaatattgttccACATTGTTTTGGAATGAGCATGATAGAGAAACACATCAGTTGAGGGTCCACTTCCATAAATATAAAGAGCACTTTTATAAGTGCGACATCTGTGCAAAAACTTTTGGTGATAAGGTATGGTACATACACCATTACTTAGAAAAGCATTGTGAGGACGAAGATAAAGCTTACCTTGTCAAGTGTTGCCTCTGCTGTAGTGTCCTTGAAAGTGTGGAGGAGATGAGAAGTCATTTTGCTTCAAATCATGCTGAAGTTCGCAAGTTATACTGTTCCCTTGAACCTTGTATGTACAAGCCATTGAGCCATAGGAAGTCTTTTAAGTTACATGTAAAGATGGTACACGGCACACCAAAACCAGAAAAAGTAGTCCATTGTAATGTGTGCCAGCGGGAGTTCCAGAGTGCACGCGCGTGTTCCACACACATGGCCCAAATACATGGACCTGGCAAGTTTAAGTGTAAACTTTGCAAAGAGGTGCTGCAGACACTTGATGAGAGAAAGCTCCACTACCTCCTCCGCCATCCAGGTCGTCATCCGTTCGAGTGCGTGGACTGCGGCAAATCATTCCAGTACAAGTCATCACTATATATGCACAGACAGGATCATCAGCCGAACAAGCAGACGTACACGTGCAGTTACTGCGGAAAGACATTTGCGAAGAAGGACTCGTACCGCGAGCACGTCCAGATCCACGAGGGGCCGCGGCACGCGTGCTCCTACTGCCCCATGCGGTTCGTGCAGCGCAGCAACATGCTGCGGCACGAGCGCCGCCACACGGGCGAGCGGCCCTACCGCTGCGAGCACTGCCCGCGCGCCTTCGCCGACAAGGGCGCCTGCACCGCGCACACCAGGTACCACCACCCCGACCCGCAGTTAGTATGA
- Protein Sequence
- MVSDESDDEPLSNLAAKKNSGDYDYQPPSDSSEDEPKKKKKKKEPPAKKLGVTIKLNRKLNSLVGPAVIERPSDVWLYLKDLNPTGPYSCLLCSDWFINRSKMILHYALNHKKDFCGICRYFVPDRSAWWDHEKFHSPWPCSQCVETFPTDVQLRVHLSSIHNLVHCRLCHFRVTADDDYSSHLFQKHNVTNAACQNDEQFWQVDYDGDDKFMCSLCSKPDLLSSTFFAHYMGFHHFTLKCLTHLIAGKNTAFTVDGADVTDRFVNEQLKGHVRLGYVDLTPKTDAQKVVKEKVVPIEIVLPEVKQEVVSDHEEQNKVAPPEPDQVPVPVPTPTLTQAPAVTAKDDNVPKDDNTPKDDNVAKDENSQSSDSILDYKGSEDYDVTVTEMIVIERSYFDYVNQLLISVSEDTVPQLSHIEYDKLKSDMLNNVQCPLCTTRLETVQSFSTHMNKVHSVKTVPLYSCRVCTAFFDTYNELANHTAWFKCKYCSTLFWNEHDRETHQLRVHFHKYKEHFYKCDICAKTFGDKVWYIHHYLEKHCEDEDKAYLVKCCLCCSVLESVEEMRSHFASNHAEVRKLYCSLEPCMYKPLSHRKSFKLHVKMVHGTPKPEKVVHCNVCQREFQSARACSTHMAQIHGPGKFKCKLCKEVLQTLDERKLHYLLRHPGRHPFECVDCGKSFQYKSSLYMHRQDHQPNKQTYTCSYCGKTFAKKDSYREHVQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYRCEHCPRAFADKGACTAHTRYHHPDPQLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01182251;
- 90% Identity
- -
- 80% Identity
- -