Pdid020668.1
Basic Information
- Insect
- Philaethria dido
- Gene Symbol
- -
- Assembly
- GCA_033558755.1
- Location
- JAKGSA010004635.1:1-3650[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.016 17 5.6 0.0 27 39 6 18 6 21 0.88 2 3 3.3e-16 3.5e-13 49.4 0.1 2 45 36 80 35 80 0.96 3 3 3.4e-18 3.7e-15 55.7 0.0 1 38 87 125 87 129 0.94
Sequence Information
- Coding Sequence
- CAGTGGCTCCCCGCAGGCATCCCGTCCAGCACGCTGTACAAGATCGCGCGGCGCGAGGGCATCCGACTGGCGGCGCCCTTCAACGCGGCGCCGACGGCGTGGCGCCGCGCCGACCTGCAGCGCGCGCTCGCCGCCATACGCGCCGGCGACGCGTCCGTGCAGCGCGCCGCGCACCTCTACGGGATACCTACCGGTACCCTGTACGGTAGGTGTAAGCGAGAGGGTATAGAGTTGTCCCGCTCTAACCCCACGCCCTGGTCTGAAGACGCCATGGAAGAAGCGCTCGAGGCTGTCAGaattggTCAAATGTCAATAAATCAAGCGGCTATTCACTACAACTTGCCGTATTCGTCATTGTACGGTCGATTCAAGAGATGCAAGTTTCAACCTGTTcagAACCAACCACCGATCACGACAGAGGAACCCCGCGACCCCATCGACCCTAGTGACCCAAACGAGCCCTACCCCCACTATGGGGTCGCAACCCCACAGCCGCACACACAAACGCATCCCCACATGTACCCACACGCGCAAGTCTCATATGAAAACTATCAGTATCAAATGTACTACACGCAGTGTGACGTCACTAGCTGA
- Protein Sequence
- QWLPAGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLQRALAAIRAGDASVQRAAHLYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMEEALEAVRIGQMSINQAAIHYNLPYSSLYGRFKRCKFQPVQNQPPITTEEPRDPIDPSDPNEPYPHYGVATPQPHTQTHPHMYPHAQVSYENYQYQMYYTQCDVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00776664;
- 90% Identity
- -
- 80% Identity
- -