Hcyd031421.1
Basic Information
- Insect
- Heliconius cydno
- Gene Symbol
- -
- Assembly
- GCA_036379175.1
- Location
- FAPN01081032.1:172-4799[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.0097 28 5.6 0.0 27 39 5 17 5 20 0.88 2 3 2.3e-16 6.8e-13 49.1 0.0 2 45 35 79 34 79 0.96 3 3 2.1e-18 6e-15 55.7 0.0 1 38 86 124 86 128 0.94
Sequence Information
- Coding Sequence
- GAACAATGTACAGGTATACCATCCAGCACTCTGTACAAGATAGCGCGGCGCGAAGGCATCCGCCTGGCCGCGccgttcaacgccgcgcccaCCGCCTGGCGCCGCGCCGACCTCGAGCGCGCGCTGCTCGCCATCCGCGCCGGCGACGTGTCCGTGCAGCGCGCCGCGCACCTCTACGGCATACCTACCGGTACTCTATACGGAAGGTGTAAACGGGAGGGTATAGAGCTATCCCGCTCTAATCCCACGCCGTGGTCGGAGGACGCCATGGAGGAGGCACTCGAGGCTGTCAGAATTGGTCAAATGTCGATAAATCAAGCGgccattcattataatttgcCATACTCGTCGTTGTATGGTCGATTCAAGAGATGCAAATTTCAACCTGTTCAgaacCCGCCACCGATCACAACAGACGCTGAGCCCCGTGACGCCTCAGAGCCTGTTGACCCCAGCGACCCGATTGACCCCTACCCCCAGTATGGCGTCGTGAACCCTCACGCGCAAACACAGGTCACTAATGTGTACCCACACGCGCATGTCTCTTATGAAACCTACCCATACGCAATGTATTACACGCAGTGTGACGTCACTAGCTGA
- Protein Sequence
- EQCTGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALLAIRAGDVSVQRAAHLYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMEEALEAVRIGQMSINQAAIHYNLPYSSLYGRFKRCKFQPVQNPPPITTDAEPRDASEPVDPSDPIDPYPQYGVVNPHAQTQVTNVYPHAHVSYETYPYAMYYTQCDVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01181819;
- 90% Identity
- -
- 80% Identity
- -