Pcor007355.1
Basic Information
- Insect
- Pherbina coryleti
- Gene Symbol
- -
- Assembly
- GCA_943735905.1
- Location
- CALSEP010000207.1:543149-544677[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.0063 90 4.5 0.1 14 52 251 293 248 295 0.83 2 6 6.7e-05 0.95 10.8 0.2 22 44 319 341 309 349 0.85 3 6 0.035 5e+02 2.1 0.0 21 44 346 369 344 373 0.88 4 6 0.00076 11 7.5 0.1 21 43 374 396 370 402 0.87 5 6 0.0018 25 6.3 0.1 21 44 402 425 396 434 0.84 6 6 0.69 9.8e+03 -2.0 0.0 22 32 431 441 428 454 0.74
Sequence Information
- Coding Sequence
- ATGTCCTCAGGTGATAGCGACGTTGTTATCTGCCGTGCATGCATCAATGATTGCATGGAATACAAAAATATCCACCGCCAAGGTATCATAATGGGTGAGCTTACAACTCTAGCCTCATTGTTGGCATATTGCACCAATTTGGATTTTCCGGAGCATGAAGATTTTCTGCCTGCCAACATGTGTACCAGATGCATACAGAATTTAGCTAAATTATATGCCTTTAAGCAGACGGTGATCAAGGCCAATGAGACGCTGCGAAATCAACACACTGAATTAATTGGTGATAGCGATTCTGAAGAGTTTCAGGCACCAACAGCAAGTAACGAAGTGCAACAAAAGCAAGAGGACGATCATTCATATGTTACACTGACTGTTTTAGAGGAAAATAAAGTACAGTCCCATAACGTGCACATACCTAACCAGGACATGGAAGACATTGAAGATTCCAAACACAGCGATGAACTAATAGATGACCAGCAAGTGAACGAAGTGCTACATGAAGGCGAACAACATGAAATATACGAAGTGGAGGAAGAGCTTGAATCTGAAGAACATTTTAAAGTTGAAGACGAGGATGAATTCATCGTAACGATACAAGAATCACAGCACAGTGCGACGACAGTATCTTCTGTTTGTGCCTCTGAAGTTGAAGAAGAGGTGCCGCATGCAGTGGTAACCACAACAAAGCGTACAGCAGAAAATATAACAGCTTTTACGGATTTTATAGAACAAAAACGGTTTCGAGCTGTTAAACCACGCATAAAAAACCACGGACGGAAGCCTGCCAATCCAGATCTGCAATGCAAGGTTTGCGGCAAACAACTCAGCAATTCGAATTCCTTTCGTTATCACATGCAGCTGCACTCGGATGCGACACCATTTCTTTGCAGTCTCTGCGGCGAAGGCTTTAAAACGCGCAACGCCTACGAAGGACACATGTCGCTACATGATCCAAACAATCCGAATACATGTGAAATATGCGGAAAAACCTATCGCCAACGTTCATCATTGCGTGCTCACATGCTCACGCACACGGGTGAGAAGCCATTCCAGTGTGATATCTGCGGCAAAGGCATGACACAAAAATCAGGCTACAAGAAGCACTTGTTGACGCACACTGGTGAAAAACCACACTCTTGCGACATATGTGGTCGTGCTTTTCGCTACTCAAGCAACCTTATATCGCATAAGCGCCACCACACAGGCGAAAAACCCCACGATTGTCCGTTGTGTGAAAAAAGTTTCTCCACTACTGAGCAACTAAAGCGCCACACGCTGGTGCATACGGGTGAAAAACCCTTCAATTGTGACGTGTGCAATAAACGTTTCAATCGACGCAGTTCTTTGGTGACTCATCGACATACACATGATCCGAATAGGGGTGCCGAAAAAAAGGTCAATAACGAAAGCGCCAAAAATGTTGATCTAGAAAATGCACCGACGCAGATAAAATGCATTGAACATTATTAA
- Protein Sequence
- MSSGDSDVVICRACINDCMEYKNIHRQGIIMGELTTLASLLAYCTNLDFPEHEDFLPANMCTRCIQNLAKLYAFKQTVIKANETLRNQHTELIGDSDSEEFQAPTASNEVQQKQEDDHSYVTLTVLEENKVQSHNVHIPNQDMEDIEDSKHSDELIDDQQVNEVLHEGEQHEIYEVEEELESEEHFKVEDEDEFIVTIQESQHSATTVSSVCASEVEEEVPHAVVTTTKRTAENITAFTDFIEQKRFRAVKPRIKNHGRKPANPDLQCKVCGKQLSNSNSFRYHMQLHSDATPFLCSLCGEGFKTRNAYEGHMSLHDPNNPNTCEICGKTYRQRSSLRAHMLTHTGEKPFQCDICGKGMTQKSGYKKHLLTHTGEKPHSCDICGRAFRYSSNLISHKRHHTGEKPHDCPLCEKSFSTTEQLKRHTLVHTGEKPFNCDVCNKRFNRRSSLVTHRHTHDPNRGAEKKVNNESAKNVDLENAPTQIKCIEHY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01415485;
- 90% Identity
- iTF_01181358;
- 80% Identity
- iTF_01181358;