Basic Information

Insect: Pherbina coryleti
Gene Symbol: L
Assembly: GCA_943735905.1
Location: CALSEP010000113.1:448231-459039[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 5.6e-06 0.00091 20.7 1.7 1 23 170 192 170 192 0.98

2 19 0.47 76 5.3 5.8 1 23 198 220 198 220 0.98

3 19 2.4e-07 4e-05 25.0 3.1 1 23 226 248 226 248 0.99

4 19 1.1e-05 0.0018 19.8 0.3 1 23 254 276 254 276 0.98

5 19 0.34 55 5.7 2.1 2 23 339 362 338 362 0.88

6 19 0.0027 0.44 12.3 0.2 3 23 386 407 384 407 0.96

7 19 0.066 11 7.9 0.7 1 23 509 531 509 531 0.97

8 19 0.001 0.16 13.6 1.5 2 23 539 560 538 560 0.96

9 19 0.0048 0.78 11.5 0.1 1 23 568 593 568 593 0.90

10 19 1.9 3e+02 3.4 0.0 1 19 598 616 598 618 0.93

11 19 3.4 5.5e+02 2.5 0.7 3 23 630 651 628 651 0.84

12 19 0.0031 0.5 12.1 2.7 1 23 693 715 693 716 0.96

13 19 2.4 3.9e+02 3.0 1.5 1 23 896 920 896 920 0.88

14 19 0.0011 0.17 13.6 4.6 2 23 929 951 928 951 0.96

15 19 0.12 20 7.1 0.1 1 23 957 979 957 979 0.92

16 19 2 3.2e+02 3.3 0.4 2 23 987 1008 987 1008 0.94

17 19 0.48 78 5.2 0.5 2 23 1100 1121 1100 1121 0.94

18 19 0.011 1.8 10.4 0.0 1 23 1131 1153 1131 1153 0.96

19 19 2.3 3.8e+02 3.1 1.3 1 23 1160 1182 1160 1182 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	5.6e-06	0.00091	20.7	1.7	1	23	170	192	170	192	0.98
2	19	0.47	76	5.3	5.8	1	23	198	220	198	220	0.98
3	19	2.4e-07	4e-05	25.0	3.1	1	23	226	248	226	248	0.99
4	19	1.1e-05	0.0018	19.8	0.3	1	23	254	276	254	276	0.98
5	19	0.34	55	5.7	2.1	2	23	339	362	338	362	0.88
6	19	0.0027	0.44	12.3	0.2	3	23	386	407	384	407	0.96
7	19	0.066	11	7.9	0.7	1	23	509	531	509	531	0.97
8	19	0.001	0.16	13.6	1.5	2	23	539	560	538	560	0.96
9	19	0.0048	0.78	11.5	0.1	1	23	568	593	568	593	0.90
10	19	1.9	3e+02	3.4	0.0	1	19	598	616	598	618	0.93
11	19	3.4	5.5e+02	2.5	0.7	3	23	630	651	628	651	0.84
12	19	0.0031	0.5	12.1	2.7	1	23	693	715	693	716	0.96
13	19	2.4	3.9e+02	3.0	1.5	1	23	896	920	896	920	0.88
14	19	0.0011	0.17	13.6	4.6	2	23	929	951	928	951	0.96
15	19	0.12	20	7.1	0.1	1	23	957	979	957	979	0.92
16	19	2	3.2e+02	3.3	0.4	2	23	987	1008	987	1008	0.94
17	19	0.48	78	5.2	0.5	2	23	1100	1121	1100	1121	0.94
18	19	0.011	1.8	10.4	0.0	1	23	1131	1153	1131	1153	0.96
19	19	2.3	3.8e+02	3.1	1.3	1	23	1160	1182	1160	1182	0.92

Sequence Information

Coding Sequence: ATGTACTCCACACACACTTCTTCCAGCTACTCACCCTCTATATCGGATGGTACTATGACGCCCAATTCGCTGCATATGCAACCACATCATCATCATCATCATGCACACCCACACTTGCCACCCCATCATCAGCAACACTTGCAAGGCTTGCCACACGAGGAGGATGCTGCTGGAATAAGGCCACGTAGGCAACGTGTTAACACTGACAACGGTAATGGCGAGCTTAATGTTGGCGAAGGCGCCGAAGATGATGACGAAAATGCCGACAATGCCACTGACAAAAAACCAAAGAGAACAGAAGGAGCACGCTTAAATGGTGACACAGACACAACGGCGGAGCAGCAGTTACAACAGCAACGTAATCGTCTGGGACGTTGTCGCACGGGCCTCGAACATGGCATGAAAATTCCAACAAAACTGCGTAAAATCGATAGGGATTCAGCAAAGTTTGATAAGTTGACAAGTGATGGCATTAAGAGCAGCGGCGTAACCGCCGCCGACGGATCCTATCAGTGTCAGTTTTGTGATAAATCATTTCCGCGACTCGGCTATTTAAAGAAGCATGAACAGAGTCACGCCGAACATCTACCATTTAAATGTGACTATTGTGCACGTCTGTTCAAGCATAAACGTTCACGTGATCGTCACACTAAGCTTCATACCGGCGACAGACGCTATAGATGTCCACATTGTGAAGCTGCTTTTTCAAGAAGCGATCATCTCAAGATCCACATGAAAACGCACGACAATCAGAAGCCGTTTCAGTGCACCATCTGCAATCGTGGCTACAATACTGCTGCCGCTCTTACCTCGCATATGCAAAATCATAAGAAACAGGCGGCTATTCTCGCGGCCGGTGGCAATCCACAGGCTCTAAACTATAGTCCACGCTCAACAGGTTCAGCTTCCAGCAACGGTAGTTTGCATAAGCGTCGTTACGCTATGACCTCGGTGGCTTCGGACAGCAGCCCCAGTCGTTTGGAATATCCAAAACGTTTGCGTAGCAACTTTCTTACCTGCACCTATTGCACCAAAAATGACTTTACCTCCTTGGAACAGCTTAATAACCACATCCACTCAATGCATGAGAAGGAGCTGGTGCCACCGGCTACACAAACACCCTCAAACACTGAGCTGCAGGCATTTCAGCTCGCCTGTGAATATTGCACCATGAAATTTCCTAATCTGCCAGCTATGTTTCAGCACATGCGCTCGACCCACATCGATCGCCTTACTAGCCCTAACTCCTACTTTGAGCACTTTAATCGTTTGGCAGCAACGGGCACCTTTAGTCCTCGCTTGATTTCGACCAATAAGACTTTGCAACGCCCTGGTGCAAATTCTTCAGAGGAGAACAACATTAAACTTGAGCAGAATCTAAGTCCCAAGACTCAAAACTCTCAGGAGGCAAAACAGGAAGAGCCAACAGATCTAAGCCAGAACAAGCGGCGTTCCGTAACACCCATTTCACCCGTTTCAGCGCCGTTGGACAACTCTCCGCGAACTCCTGAGAAGCCGGGCATATTTTTCTGCAATCAATGCAACGCTGGTCTGCCTGACTTCGAGAGTTTTCGCAATCATCTGAAGTCACACATTGTACAAGGTGCCCAACTAGTCTGCCATCACTGTGGCCTAACATTGCGCGAACAGTCCGAATATGAGCGACACGTAATCTCACACTTTCTCATCAGCAATTCGGAGTTCAACTGCGGAGGAGGCAACTGCAGCAAAACGTACGTCAAGCCCGAAGAACTTCAGAAGCATTTGCTGGACAGTCATGTGGTGACCATGTACAAGTGTGCTTTGTGTTCGGAGCTATTCGAAACCAAGGTGGCCATTCAGGTACACTTCGCTTGCACGCACTCACAGGAAACCAAAGTTCTACGTTGCTCGGCCTGCATGGATGTGTTTCGCTCGGAACAGGATTTTAATACACATGTCAAGACGCGTCATCAGGCTGTCAATGGATCGTCTTCCAACGCCAACAACAACTCTTCATTGCAGTGCATGTTCTGCCGCACTGTCTGTTCTTCGGATCTGGAAATGCATTTCCACTTGGCAGCCCATGCACGTCAATTTCGCTGTCCTTCATGTCCGGAGACATTCCACGTGGAGTTCCTGCTCGATCGTCATATGCAGAGTCATCATTCGGGCAATGAACGGCCACCAACAATGCTGCCACCAAATAAGGACAACTTCGAAGATCACTCATCGCCTATTAATATCAACAACAGCACAAATAATCAGCTGAGCCCCATGAACTCTATCTACGTGAACGCGCTCTTTGGCAAATCCACGCTGATGCCGCTGGCTGCTCAAAACAATAATAACAGCATTCTTGACTACAATGTAGCTTTTGCCGCACATCTCAATAAAGGACTCTTTCCCGCTGCCGCTGCGGCCGCTGTAAATGCCGGAAAGTTCTACAGTCCACTCCAGGTGGACACTAGCGGCATGAAGCATCCAGCGCTTATGTATGGTTTGGGTCAACGCTACTTTGATACCAATCGCACGCTTATCGACATGTACAATCAGCATCACCAGGAGAAGAATTCGGTAGTGCCAAGCTCGAGCACGTACTTCATAAGTCCCAAGCACTCAACAATGCCACAAGCGCAGGAACAAACTCCACCCAATATACGCAAAACACCCACTGACGCAAGTTCGATATCTCTGACTGCCGGCTTTAGCTGCGGTATGTGCGAACGCAATGATTTTCGCACGGAGACCGAGTTGCACTCACACCGCAAGATTGTGCACAATATGAAGACCGGGGTAAGTTTGCGGTGTGCTTACTGTTCGGGCAATTTCAAGTCGCGCAGCGAGCTCGAACATCATATGAAGACGTGTCACAATTCAACGGGAAAACATAAGTGCTTAATTTGTGACGAGATTTTCCCCTCGCCTGCCATACTCGCCGAACACAAGCTACAGCACTCTAAAGTGGGACAGTCGGGCAAGTGTTCGCATTGCGCCAAGCCGTTGAACGATGTTGCCGCTTTTAAAGGTCACCTGACGGAGCATAACACTGAGGGGCAGATGCCGGTGCAGTGCATTTGTTGTCGCCAGTCATTACATTCGGACTTTGAGATCGGACTTCATGCAAAATTCCACACAAAATCCTCTAACACACCTGAAGCCATTTGTGCACTTTGTCTTGAGACAATTCCAAACGCCCCGAGTGAAACTAAAGTGTGCGAGAAATGTTGCCGTAAACACAACCTGAACAACAAGTTCAACAAAAGTCGTGAGAACTATGAACGCGCCAGCAACGAGCAACGTCACTACATAGAGAATCGGTGCAATCTCTGCAAAATGATTTTACCACATCCACAGAAGCTACAGGAACATCTAGTCGAGCACACTTTTGCGGGTTGCGAAGATCGAGGATTCATCTGCTACATATGTTCCGCAGTATTCACGGCACCCGCGGGACTGCTCAATCATATGACCGAGCACGGTCTAAATGCTCGACCCTACGATTGTAATCTATGCACGGATAAATTCTATTTCCGAGCTGAGCTGGATCATCATTTGGTCGATCATGAGCTCAGAGAGATTTTAGTTAAAGAGCGCAATTCGCCGCTGACACCTGAAGCACGAGAAGAGCCACATGGAACTGAACAGCTGGAACAGCAAAAACAGCAGAGCACGGAAATGTTTTGCGTTTCAACAGCAACGGCAACGACAACAGCTGCTGTTAAGAAGGAAATTTTCGAGAATCACAACAAACATGAGGCTGGCGAGGAAGATGATGAGTATATCGAAGTCGAAAAGGTGCCCGAACTTGCTAATCTCAATAGGGGAAATAACGAAGCTACTGAAGCTACAGACAACACAGATAAACAGATTACACTCGTTTCGGCGGATTAA
Protein Sequence: MYSTHTSSSYSPSISDGTMTPNSLHMQPHHHHHHAHPHLPPHHQQHLQGLPHEEDAAGIRPRRQRVNTDNGNGELNVGEGAEDDDENADNATDKKPKRTEGARLNGDTDTTAEQQLQQQRNRLGRCRTGLEHGMKIPTKLRKIDRDSAKFDKLTSDGIKSSGVTAADGSYQCQFCDKSFPRLGYLKKHEQSHAEHLPFKCDYCARLFKHKRSRDRHTKLHTGDRRYRCPHCEAAFSRSDHLKIHMKTHDNQKPFQCTICNRGYNTAAALTSHMQNHKKQAAILAAGGNPQALNYSPRSTGSASSNGSLHKRRYAMTSVASDSSPSRLEYPKRLRSNFLTCTYCTKNDFTSLEQLNNHIHSMHEKELVPPATQTPSNTELQAFQLACEYCTMKFPNLPAMFQHMRSTHIDRLTSPNSYFEHFNRLAATGTFSPRLISTNKTLQRPGANSSEENNIKLEQNLSPKTQNSQEAKQEEPTDLSQNKRRSVTPISPVSAPLDNSPRTPEKPGIFFCNQCNAGLPDFESFRNHLKSHIVQGAQLVCHHCGLTLREQSEYERHVISHFLISNSEFNCGGGNCSKTYVKPEELQKHLLDSHVVTMYKCALCSELFETKVAIQVHFACTHSQETKVLRCSACMDVFRSEQDFNTHVKTRHQAVNGSSSNANNNSSLQCMFCRTVCSSDLEMHFHLAAHARQFRCPSCPETFHVEFLLDRHMQSHHSGNERPPTMLPPNKDNFEDHSSPININNSTNNQLSPMNSIYVNALFGKSTLMPLAAQNNNNSILDYNVAFAAHLNKGLFPAAAAAAVNAGKFYSPLQVDTSGMKHPALMYGLGQRYFDTNRTLIDMYNQHHQEKNSVVPSSSTYFISPKHSTMPQAQEQTPPNIRKTPTDASSISLTAGFSCGMCERNDFRTETELHSHRKIVHNMKTGVSLRCAYCSGNFKSRSELEHHMKTCHNSTGKHKCLICDEIFPSPAILAEHKLQHSKVGQSGKCSHCAKPLNDVAAFKGHLTEHNTEGQMPVQCICCRQSLHSDFEIGLHAKFHTKSSNTPEAICALCLETIPNAPSETKVCEKCCRKHNLNNKFNKSRENYERASNEQRHYIENRCNLCKMILPHPQKLQEHLVEHTFAGCEDRGFICYICSAVFTAPAGLLNHMTEHGLNARPYDCNLCTDKFYFRAELDHHLVDHELREILVKERNSPLTPEAREEPHGTEQLEQQKQQSTEMFCVSTATATTTAAVKKEIFENHNKHEAGEEDDEYIEVEKVPELANLNRGNNEATEATDNTDKQITLVSAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01415273;
90% Identity: iTF_01415273;
80% Identity: -