Basic Information

Insect: Pherbina coryleti
Gene Symbol: -
Assembly: GCA_943735905.1
Location: CALSEP010000069.1:351053-363798[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 1.6 2.6e+02 3.6 4.3 1 23 1616 1639 1616 1639 0.92

2 13 0.18 30 6.5 0.6 1 23 1809 1831 1809 1831 0.96

3 13 0.0001 0.017 16.8 3.8 2 23 1834 1855 1834 1855 0.97

4 13 0.00024 0.039 15.6 0.1 3 23 1863 1883 1861 1883 0.98

5 13 1.4e-05 0.0024 19.4 4.8 2 23 1890 1911 1889 1911 0.97

6 13 6.1 9.9e+02 1.7 0.1 5 23 1924 1942 1923 1942 0.96

7 13 1.6 2.5e+02 3.6 5.4 3 23 1949 1970 1947 1970 0.93

8 13 0.016 2.7 9.8 0.1 2 23 1981 2001 1980 2001 0.96

9 13 2.5e-05 0.0041 18.7 0.6 1 19 2007 2025 2007 2029 0.95

10 13 1.3e-05 0.0022 19.6 0.9 1 23 2037 2059 2037 2059 0.98

11 13 0.00012 0.019 16.6 7.6 1 23 2065 2087 2065 2088 0.96

12 13 0.00014 0.023 16.3 4.3 1 23 2093 2115 2093 2115 0.98

13 13 0.002 0.32 12.7 6.0 1 23 2121 2143 2121 2144 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	1.6	2.6e+02	3.6	4.3	1	23	1616	1639	1616	1639	0.92
2	13	0.18	30	6.5	0.6	1	23	1809	1831	1809	1831	0.96
3	13	0.0001	0.017	16.8	3.8	2	23	1834	1855	1834	1855	0.97
4	13	0.00024	0.039	15.6	0.1	3	23	1863	1883	1861	1883	0.98
5	13	1.4e-05	0.0024	19.4	4.8	2	23	1890	1911	1889	1911	0.97
6	13	6.1	9.9e+02	1.7	0.1	5	23	1924	1942	1923	1942	0.96
7	13	1.6	2.5e+02	3.6	5.4	3	23	1949	1970	1947	1970	0.93
8	13	0.016	2.7	9.8	0.1	2	23	1981	2001	1980	2001	0.96
9	13	2.5e-05	0.0041	18.7	0.6	1	19	2007	2025	2007	2029	0.95
10	13	1.3e-05	0.0022	19.6	0.9	1	23	2037	2059	2037	2059	0.98
11	13	0.00012	0.019	16.6	7.6	1	23	2065	2087	2065	2088	0.96
12	13	0.00014	0.023	16.3	4.3	1	23	2093	2115	2093	2115	0.98
13	13	0.002	0.32	12.7	6.0	1	23	2121	2143	2121	2144	0.96

Sequence Information

Coding Sequence: ATGATGGAAAAAGTGCAGTGCCCTGTGTGCACCTTATTCCTGCACGCAGGGATGAACTTATCGGATCATTTAGAGACTCATCCCAAGGAGCAAGTGATCAAAGCCCTTGTGCAGATGACAGTCACTCGTTCAGTGGTAGATGATGTGAAGAGTGCACCAATTGAAGAATCTATGGATGAAAAGAAACCTGATGTTGATCCCTTGATTGCTTTGTCGGCTAATACGACTCAGAATGATCAAGAACAGTGTTCAAACTCCAATACAGATTCTTCGTCTTCGTCCTTGCCATCATCGTTTTCCTCAAACAATAGCTTGAACTTACAATTTGGAACGCAGCAGCATCATAAGAAAAAAGTATCACCTCTTTCCACATCGACAGCACTATCTAAACACTCGGGGAAACATATTTTCAACCACCAGAATGTCACATCTTCGCCTGCTTATCAAAAAAGTATTGGCGCTATCAATTTAGCTGCTGAAATGAGTGAGACCATTGCTGATGTCACAAATGAAGTTTCGTCGATGCCGACTGATTTTAGTACATTCTCAAATCGATGTCAACAGCAGCCACAGCAACAACAACAAGCAACGAGTCAATTTCAACACCAGCATATTACAGTTTCACAAACTCCCCCACCACAATTGTCAGAAGTGGATCAAAAATGTGCACAGCTGACTCTCTCTGGAATCTCGCAAAGCTTCCATTCAAAAGCACAGAAACAGCAGCAGCAACAGATACAATTGCTCAGTCCTGTTCATCAACCAAATCTGCAGCATACACAGCAAAGGCAACTTCAACAAGTGCCCCTGTCACAGCATGAAAATTTGAAAATTTTTTATTCGTCCACATTGCCACCACCACCGCCACAATTACAGATGTTTAGCTATCAGCCGCCAACTCAGCCCCTTCACCAAAAACCACCACCCGCTTATGGCACCGCCATCAGTCAAATACGATCTCAACACAACCAAAATAAACAAATCCCACTGCAGCTAACACAACAGCATCAGTTTCATCGCTCGGCAACGGGGCCGACAGCAGCAAACACAACATCTATTTCTAAGCCTCTTATATTGAAGAAAAACGTGCCTCCTCATCAGCCGCTGGTCTCTGCCGCGCACCAAAAGCAATACCATCAAGCACAACACCAACAGCAACAACTACAACAAAGCCAACAACAACTACAACAAAACCAACAACAACAACTACAACAAAACCAACAACTACAACAAAACCAACAACATCAACACCAACTGCAACAAAACCAACAACAACTACAACAAAACCAACAACAACTACAACAAAACCAACAACAACAACAAAACCAACAACAACAAAACCAACAATTACAAAACCAACAACAACAAAACCAACAACAAAACCAACAACAACAAAACCAACAACAACAAAACCAACAACATCATCATCACCACCACCAACACCACCACCAACAGCAAACCCAACATGAGACTGTTCAGATTCAGCAACAACTTCCAAAAAATGTTGCAAGTTCAGCAACATCCAACACATTTCAGAAATTGGGAACATATATACCACGAGTTGTCCCTCCTCAACAAACATCAACTCCTGATTTACCAATGCCGACTTTTGTACCACCGCCATCAATCAACCGTCTTACGAACTCTCCCTATCCACCTTTACTATCCGCAACCATGGCTTCACCTTCGTCTTGTTCGTCTGTTCTGCGATACGCTGAATCGCCAGTTACTGCACACTATCTAGAACGTGATAATGGCGACTTTATCGTCCAGGAAACTCCAAAACATATCGTAGAGTGTGTTGAAAAGGATAACGGCGAATTCTCTGTGATTGAGCGCATTTATCAGTCACCACCGAGTGTATTGCGCATACATGATGGCGATGACGAGGAAAAGGATGAAGATGAGCTCCATCAAGCTGAAGCTAATGGCAAAGATAAGGAAACCGCCAATAATGACAGTAATAGAAAAAGAATGGTAGAACAACAATATGACACCGAAGACGAATTCATGAGCATCGATGGTGATAGTGAAGTGGAAGAAATAACAACGCTTTCAGAAGGAATTGGCAAGTCCACAAAAGAAACCATGTACCAAAATGGAGGCGTCGATAAGCCAACAACTAGCGGCGGTGCTCAGACGGACTTAATTGTTAATCCAACAGCGGCAACTCATGCAAACAACAACAATGTTGCAATAAATACTTCGCGCAAAAAATCTTCGAAAAACACCATTACTGTGCTCAGTGATGTGCAACTTAATTTAAATGAATACTTGGACTTGGTAGGTAATATTATAGCATCTAGCAAGATCGCCAAAAATCAAGCATTAGATTCATCGGTGCCGATGCCACTAGTTAAAGTAGAAAAAGTTGAACCAATCGATGACTATGAGACAGAGGATCAGCAACAACATACTGGTGACTTGGGTGAACCACTCAGTACTAGAGAAGACTCAGATATGGATATTGAAACAGCCGCTAAAAGTCTACAAGAACCACCTCCAACAACAAAAATAGCAACCACCAACACCTCTATCATCAACAATAACAACAAAGATAACATTACTGAGACTGATTTAGTTGCAAATAATTATAGTAGTAAGCAAATCCTACCAGAACAACCCACAGCGCAAATAGCCCAAGCCGAAATCAAAGCGAAAAAGCAGCATCACTCCAGTCATGCAACAACGAGTGTCATACGCATGGCAAGCACCACGGCTAGTCAGCAATATTTAACGGAATTAGTAGATCAGCCTATTCCCATTGTGGATTTAAGTGCGCAACCTAATGAAGACATGTTGGCGCATGAAGAATTAACACACGAATCCAATCATCTGAAAAATGCTGCCTTGAATGCTAATGTCGCAGAGGATTTGTCGCCACAAACCCAAATAAAAACTCAAGTTGTTTCTATCAAAACTGCCGATGCGCCAGCACCTATCCCGATACCGTTGAAAAAGGGGCCAAAAAAGCTTGTGATTAAGCCAAAATCTAATACAATTGCAACAAACAATAGCAGAGAAGATCCCATTGCTATGATTTGCGATGAGAAACCAACAAATTTCGCTAGTGCTCAAAAGGGCGAAGAAGATCCCATAGCTCCAAATCGGGAAAATCAATCATTAAAAACTATAGTCATTAAAAGTGAACCCAATATCGCCACGGAAACGCCTAGCATATTGCAGCAGCATTTACGCATCCCTACAAATCCACCAGAGCTTAAGCAGGAATCTTCATTCTTGCGCACTGACACAGAAATGATTTTTAAACAGGAGAGCCAGCAATTTTATATAAAACATGAAAATGATGACATTAATATTGTGCCAAAACAACCAGATTCCGAGGACAATCAACTCAACAGATCCTCTCCACCAGCAGAAAATGAGGACGCTCGTGTTTTGCTGGATTTTGCTAATTCGAATAAAAAGGAAGAACCTGAGTCCGCTTCCTCAACTGCATCCGCAATGTTTCCATCGCCGAATTCAATTTTTGCTGCCGCTGCTGTGGATAAGTCGATTCTGACGAATTCCACGTGTTCAACTTCTTCAACGGCCACATCAGGCACTTCTTGTAATGCTTTGGAAACATTGCGTTGCGACGATGAATTTATTGTTCCTGATGCTACAGATGTTGTTCAAGAAATTGTCATATCATCTTGCTATTCATCGCAGTCTGCCTCAGATGTTGCGCTTGTTAATAACAATCAAAACGATGCCGATTCTCACAACCATCAAAATAACAATTTCACCGACTATCCATTTAGTTTCCTGTATGGAGGTGGTAGCGTGGCCCAGGAAATTGCAACGAAAGGAAACTTTTCTCCAATTTATCACCAACAGCCCCACGATGCAACCACTGCTGCAACTGTTGCCTCAGGTAGCAATTCTGTGACTATTGGAGAATTAGCAAATGATCAGGTACATCGAAGTCAAATGAACAATCGTTATCATCAGCCGACATCAGCTTCGACAAGACAATGGTATCAAGCAGTTTCTACTTCAAATACTGATTTTGAAGCTGCACTGGCCGTAGATTGTGGCGGTTGTGCTGAGGGTAGCAATGCCGGCAACTACTTGGATTTGGATTCTTACAAGCGCGTAAGCGTGCCTGGTGGAGCGCATCCCACGACGGCAGCGCTATCATCCTCACTTTCGTCTTTTACTGCTGCTACAGAGAGCAGCCTGGCAGGTTGTACCACGGATGCTTTAAATATACGCACAGATGAAAAGATGCCAGCGAAAGGTGAGATCTCGGAGCAAGAAAGTAATTGTGATATAGAAAATTCCTGGAGTCAGTCGATGTATGGCGATATTCCAGTACGTTTTTTCAAGTCTTCATTCCCAGGTCTGTTTCCGCCAGAGAATTGTTGGAACAATGAGGAGTACTTTACCATACAGGACTTGAGTGCGTCTGCAGGTGTCACGAGTGTTAGCAATAAAGCCACAAAGAGCTTTGATTTTCGTCTTCCTATGGAAACTGCTAGTACCACTGAAGCAACACCAGGTACAAGCAGTTCAACACATCAACAACAACCGCAACCACAACGTACTAACACAATCCCATCAACATCTTCTAAGAAAAAAAGAAAACGTGATTCTCATGCAGCAAAAACTACAACAGCTACGAGAACCATTGCTGCAACAGTTACGTCACAAGATTTACAACAGCAATTGCAACAACACCAACAACAACAAGAGCAAGAACAAGTTCAGGAACCGCTGCTTGCATATCCCCAAGAATCACCAACAACATCTGCTGCAGTACTGGCTGGTCCATCAACTACTGCCGCCGCTGCTTGCGTTGCGACTTCTGCTAGCACATCCAACAGACGGGTTGCGAAAGTATTCACGTGTGTCCATTGCTTGACGAAGTTTTCTAAGCTGAAAGATCGAAATCATCATATGGTTGCTCAGCATAATTATGTGCTGCGAAATTATCGCCTTGTTCCTATGCAAAAATTAGCTCCAAATGCAGCTCCTGATACGGCGACAACTTCGACAAAAACAACAGCTTTATTGGCAGCAACAAGTTCAGATGCTGGTACTTCTAGTGCCGCTACTTGCTGCACATCCATACTTTCAACGGAAGAGCAACAAATTGAAGTGCAAGAAGATTCAAAACGCGGTATAGTCAAAATTGAACTGGATCAAGCAGAGCAAGCCATGGCCGCCAGACTTGCCAGCGATGTGGAAGGAATTGATCAAGTTTTAACCAAGTCTGAGTTTGTCGACGAAAAGGAAGACTTGGCTTTAGTGTCCACCAACCTTAATTCTGCTGCAGATGCACCCGCCGATACAGTATTTTTACCTTCGCTGACTCGACTTTATAATCTCTATCACATGTTGATCTCATTCAATATAGCAGCGCTTAAACAGAATCAAACACTCTCAGAGGCTGATGAGAAACTAATGTTATCCTCAATTTTCTTTTGTCTCATTTGTCGCCAAAAGTTTGGTACCGTAAAATTGTTTGACGCTCATATGATGGAGCATCCAGCTGAGTGTTTCACATGTGGCAAAAAATTCCACCGTTGGTCAAATTTGTCCCTACATTTAAAGCGCCATTTAGGCTGGAAGGAATTTGGCTGCAGTGTATGTGATAAAAAGTTTGTGGTGCGCAGCGCTTTGGTGGAACATGTGCGCATGCATACAGGACAAAAACCACTTAAGTGCAATATATGTGACAAACACTTCAAACGCTTTTCAAATCTCGCTCAACATCGTAAACGGCATGGTAAACAAATCATACGCAAAAAAGAATTCGTTTGCTACTGCGGTGAAGTGCTTCCATCCAAAGCACGTTTTTTGTGGCATAAAGAGACTCATGATGCAAAACCGAAATGTTGTCCCTATTGCTGCGACCGTTTTGTTCATGCGAACTCTTTGCGGCGTCACATACGCTTAGCTCACTCAGATAAATTTGACTACACCGAACCTATGGAGTGCCCCATGTGCAAGCAGGTCTTTGCCAAATCCTCAATACGTGCACACATGGCAACACATTCAATGGAGATGCAACACGTCTGTCCGATTTGTAGCAAATCTTTCTCTACCAAATGGAATCTTAAAATACACTCATGGGTGCATGCCAACCGCACCTCGAAACCATTCAAATGCGAGCACTGCCCCAAGGCGTTCGTGCGTGAAGTTGATTTTAAAAACCACATCAATGCACACAAACAAATTAAACCATATACTTGTGAATATTGCGGTTGCAAGTTCATACGTAAATACAATTATATGCGACATCGGCGTGAGCATCACGGCAATAAGAAATTCACCTGCGACCTTTGCAAGAAATCTTTTCATCGGCAGTACTATCTGGTTGAGCATCGACGCATACACACCGGAGAGCGACCATTCCAGTGCACAATTTGCGGCAAGAGTTCAACAACAAAGACTAATCACAACAAACATTTAAAAATACATCATTCACGCGATCCATTTACGGTTGAGGCCTAA
Protein Sequence: MMEKVQCPVCTLFLHAGMNLSDHLETHPKEQVIKALVQMTVTRSVVDDVKSAPIEESMDEKKPDVDPLIALSANTTQNDQEQCSNSNTDSSSSSLPSSFSSNNSLNLQFGTQQHHKKKVSPLSTSTALSKHSGKHIFNHQNVTSSPAYQKSIGAINLAAEMSETIADVTNEVSSMPTDFSTFSNRCQQQPQQQQQATSQFQHQHITVSQTPPPQLSEVDQKCAQLTLSGISQSFHSKAQKQQQQQIQLLSPVHQPNLQHTQQRQLQQVPLSQHENLKIFYSSTLPPPPPQLQMFSYQPPTQPLHQKPPPAYGTAISQIRSQHNQNKQIPLQLTQQHQFHRSATGPTAANTTSISKPLILKKNVPPHQPLVSAAHQKQYHQAQHQQQQLQQSQQQLQQNQQQQLQQNQQLQQNQQHQHQLQQNQQQLQQNQQQLQQNQQQQQNQQQQNQQLQNQQQQNQQQNQQQQNQQQQNQQHHHHHHQHHHQQQTQHETVQIQQQLPKNVASSATSNTFQKLGTYIPRVVPPQQTSTPDLPMPTFVPPPSINRLTNSPYPPLLSATMASPSSCSSVLRYAESPVTAHYLERDNGDFIVQETPKHIVECVEKDNGEFSVIERIYQSPPSVLRIHDGDDEEKDEDELHQAEANGKDKETANNDSNRKRMVEQQYDTEDEFMSIDGDSEVEEITTLSEGIGKSTKETMYQNGGVDKPTTSGGAQTDLIVNPTAATHANNNNVAINTSRKKSSKNTITVLSDVQLNLNEYLDLVGNIIASSKIAKNQALDSSVPMPLVKVEKVEPIDDYETEDQQQHTGDLGEPLSTREDSDMDIETAAKSLQEPPPTTKIATTNTSIINNNNKDNITETDLVANNYSSKQILPEQPTAQIAQAEIKAKKQHHSSHATTSVIRMASTTASQQYLTELVDQPIPIVDLSAQPNEDMLAHEELTHESNHLKNAALNANVAEDLSPQTQIKTQVVSIKTADAPAPIPIPLKKGPKKLVIKPKSNTIATNNSREDPIAMICDEKPTNFASAQKGEEDPIAPNRENQSLKTIVIKSEPNIATETPSILQQHLRIPTNPPELKQESSFLRTDTEMIFKQESQQFYIKHENDDINIVPKQPDSEDNQLNRSSPPAENEDARVLLDFANSNKKEEPESASSTASAMFPSPNSIFAAAAVDKSILTNSTCSTSSTATSGTSCNALETLRCDDEFIVPDATDVVQEIVISSCYSSQSASDVALVNNNQNDADSHNHQNNNFTDYPFSFLYGGGSVAQEIATKGNFSPIYHQQPHDATTAATVASGSNSVTIGELANDQVHRSQMNNRYHQPTSASTRQWYQAVSTSNTDFEAALAVDCGGCAEGSNAGNYLDLDSYKRVSVPGGAHPTTAALSSSLSSFTAATESSLAGCTTDALNIRTDEKMPAKGEISEQESNCDIENSWSQSMYGDIPVRFFKSSFPGLFPPENCWNNEEYFTIQDLSASAGVTSVSNKATKSFDFRLPMETASTTEATPGTSSSTHQQQPQPQRTNTIPSTSSKKKRKRDSHAAKTTTATRTIAATVTSQDLQQQLQQHQQQQEQEQVQEPLLAYPQESPTTSAAVLAGPSTTAAAACVATSASTSNRRVAKVFTCVHCLTKFSKLKDRNHHMVAQHNYVLRNYRLVPMQKLAPNAAPDTATTSTKTTALLAATSSDAGTSSAATCCTSILSTEEQQIEVQEDSKRGIVKIELDQAEQAMAARLASDVEGIDQVLTKSEFVDEKEDLALVSTNLNSAADAPADTVFLPSLTRLYNLYHMLISFNIAALKQNQTLSEADEKLMLSSIFFCLICRQKFGTVKLFDAHMMEHPAECFTCGKKFHRWSNLSLHLKRHLGWKEFGCSVCDKKFVVRSALVEHVRMHTGQKPLKCNICDKHFKRFSNLAQHRKRHGKQIIRKKEFVCYCGEVLPSKARFLWHKETHDAKPKCCPYCCDRFVHANSLRRHIRLAHSDKFDYTEPMECPMCKQVFAKSSIRAHMATHSMEMQHVCPICSKSFSTKWNLKIHSWVHANRTSKPFKCEHCPKAFVREVDFKNHINAHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGNKKFTCDLCKKSFHRQYYLVEHRRIHTGERPFQCTICGKSSTTKTNHNKHLKIHHSRDPFTVEA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01415264;
90% Identity: -
80% Identity: -