Pcor024377.1
Basic Information
- Insect
- Pherbina coryleti
- Gene Symbol
- -
- Assembly
- GCA_943735905.1
- Location
- CALSEP010000930.1:124415-130999[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 4.5e-05 0.0073 17.9 0.2 1 23 269 291 269 291 0.97 2 24 7.3e-05 0.012 17.2 1.2 1 23 297 319 297 319 0.99 3 24 0.00081 0.13 13.9 1.9 2 23 353 374 353 374 0.97 4 24 0.0064 1 11.1 1.6 1 23 447 470 447 470 0.96 5 24 0.00055 0.089 14.5 0.8 2 23 548 569 547 569 0.96 6 24 0.11 18 7.3 0.9 2 20 607 625 606 628 0.93 7 24 0.00047 0.077 14.7 0.3 1 23 712 735 712 735 0.91 8 24 7.2 1.2e+03 1.5 0.4 3 23 775 796 773 796 0.90 9 24 0.0038 0.62 11.8 2.1 2 21 812 831 811 833 0.93 10 24 5.1e-07 8.3e-05 24.0 0.3 1 23 840 862 840 862 0.98 11 24 0.00018 0.03 16.0 1.6 1 23 1007 1030 1007 1030 0.96 12 24 0.0017 0.28 12.9 0.2 1 22 1037 1058 1037 1058 0.95 13 24 0.0081 1.3 10.8 1.0 1 23 1067 1090 1067 1090 0.97 14 24 0.0041 0.67 11.7 1.2 1 23 1105 1127 1105 1127 0.95 15 24 0.00028 0.046 15.4 1.9 2 23 1135 1156 1134 1156 0.97 16 24 1.1 1.8e+02 4.1 0.1 2 20 1183 1201 1182 1203 0.91 17 24 0.095 15 7.4 0.6 1 23 1266 1289 1266 1289 0.97 18 24 0.039 6.4 8.6 0.9 1 23 1326 1349 1326 1349 0.96 19 24 0.00041 0.066 14.9 3.0 1 23 1373 1396 1373 1396 0.98 20 24 1.2e-05 0.002 19.6 0.2 1 23 1428 1450 1428 1450 0.96 21 24 0.00025 0.041 15.5 3.1 1 23 1456 1478 1456 1478 0.99 22 24 2.4e-07 3.9e-05 25.0 3.4 1 23 1484 1506 1484 1506 0.98 23 24 2.2e-07 3.5e-05 25.2 2.4 1 23 1512 1534 1512 1534 0.99 24 24 0.0014 0.23 13.2 0.1 1 22 1540 1561 1540 1564 0.90
Sequence Information
- Coding Sequence
- ATGGGAACAAATAACTTGGAGTACTTGCGTACTAATGCTAAGTCCCTATGTCGTACTTGCTACCAGATTAGTACACATCTGCACCCGCTCTACGAACACACTGAGCAATTTCCCTTGAAGTCGCTGGCCGATCTGTTATACGACATAGCCAAAATAAAGATAAAACCAGCCAACCATGAGGATAGCTTGCCTGCACAGCTCTGCACAAACTGTTCGCGTAAACTAAAGAATGCTTATACGTTTGTATTAAAGGCGCAGGAAACCAATGAGAAGTTAGTTCAGTTTGCGCAGCTCATGACTGCAAGAACTACGGTTGAAAATATGGCGGCAAGCGTGACCAAACAGTTGGATTGCCTTCTGGAAGCACCTATAGATATACCATCGAAATCGCTAGAGTTTGTGAAAATCAAAATGGAAAATGAATTTGCGGATGAAATTACATTCGACTCTTTCTCCTTGCCGGATCAAATTAACGAAGATTTTGACAACACCGTCGAATCCGACAAAGTAAAAGAATTCTTTGAAGATTTTGAGGAGCAGGACGAGTTCACCGTGGTAAATATCAAGCGAAAAAATTCTGATGCGACATTGGAACTAAAGAATGAAGATTCCTTTACGAGATGTGACCTGGTGCATACAAAAGACCCTATTAAGACTGAAGGAAGCAAAAGGAAACTAAGAAGCGCACCTGATACTGATACTGATAACGATAACAATTGCAATGATTCTGATAGTGATTGGGAAAAAAATCCTAAACGTAGAGGTGCTAAGAAAAGAAAAAAACTTTTGGATTCTAAGGGACGCTACTCTTGCGAAGAGTGTGGTAAAACATTCGCTTGGAAAAAAGACCTCAAACGTCACGCACTCATTCATAATCCATATCCAGCATATCAATGTGATTTATGCGATCGCAGCTTCTTGCGGAAAGATAAGCTCAAAGATCACCTCAAGGTTCATCAGCGTAGATCAGATGAAGCGTCTCAATTTTGTGGAAGACGCCATCCGGAATGGAACTTTGCTGAACGTCTTTATTCAGAAAAACGTTTTAAAAAGGCTGAATGTAAATTGTGCAACACTGAATTCGAATCTAGACATTTATTACGCGCTCACCTGCAAAGTCACTCAGATCCCGACACCCTCCATATGCTGCAAATCGATACTGAAGTGGTGAAAACTTTAAATCCACAAACGACCCATACTTTAAATGAAATCAAATCTCAGATCTGTCAAGATGTCTTGGAACAAAGTTTGGGAAAATTTTATGCTATTGTCAATGAATACGGCTACGAGTTAAGCCTCAGCGATACGGATGTCGATCAAGAACCAAATGTTGCTAAATATGAGTGTGAACTGTGCAGTGAAACATTTAATCGCAAGTTTGAAGCATTTTCCCATCTGAAAAACAAGCATGCTAATGACAAGATACCTTACAAGTGCATCGTGTGCAAAGTAGAATTTGTCTGTCGCAAACTGTTCGATGAACACACGCGTACGCAATGCCGCAACAAAGAGAAGAAATACCAATGTCTAAAATGTCCGGGGAAATTCATGTGGCTTGAAAATTTAGACGCTCACAATTGCTCGAATCGCTTTAATAGCGCTGAGTATAAGTCTCAATTGCCGAAAAAACGCGAACTTTTGCAGTGCAAATTATGTGACAAGACATTCGTTTGGCGCAAAGATCTGAAGCGACACGTAGAGTCACATGATGCAAGTGGCACTTCACATGAGTGCTCCATTTGTTTGCAATGGTTTTTAAAAGTCGATAATTTGAAGTTGCATTACAAGCAGGCGCATTCACAGATACGCCGGCGCATTGAATGCTGCCTGTGCGGAGAACGTTTAAGTTCGTTAAAGCAATTACGAACTCATCTTCCTCAACATGCTGATGGTTTTTCTGGTATAAACAGCCAGAACGGTATATTCTTTAAATACTTCCAAAGTGAGTACAACGCAGAATCAGTGGATGGCCAGCCATCGGAGATTGCTCATGTTATAGCCAATAATTTTCTGCAGCAAACAACAGCACATTTTTATTTAGCCGTCGATGAGAGCGGCAATGAACTGGATCTGGGGGATTCTGAAACCGACGTTGAGTCGGACTTAGCCTCCGCTGATGACAAGAAGGCAATTTATAAATGTGAGGTATGTGGAAAAGCGTTCGCTAGGCGAAAAAAAATTCTTTTGCATCAATATGCTGAGCATGGGCAACTAGAAACGTTACCACATCGCTGTGAATGTTGCAATAAGCAATTTGTGTGCCCTGAACTATTAGAAAACCACGTTCAATCAGATTGCCAGAATATTTTCAAGAAGTGGAACTGCAGCAAGTGTGCGTCGCGGTTTGTTTGGGAGCAAAATCTGCAGACACATTTAACCATCAAACATTTTGATCCCGAACAGCAAATAAGCCGCAAACTAGCCAACAAGTTGCAGTGTGACGATTGCGATAAGACTTTTATTTGGCCCAAAGACTTAAACCGCCACAAACGGTGTCATCTGCCCGATGATGAGAAGTACGAATGCCCGTTATGTCCACGGCGTTTTAATCGCAAAGACAACATGCAGGCTCACATAAAAATTCATGGCGCTGCTGCAGGTCTGGCGGCCGTTTGCAAAAGGGACTCAACAAGATCTGGCAAGCAAACTAAAGTTAAAGCTGTTGACGAGCATCTTTGTAAACCTCACGGCTGCAAACTTATTCAGTGCATGATTTGTTTGTCTAAGCATTCGAAAATCACTGATTTACGTACACATTTGCGTACACATCAATACGTCATTTCACTAGCTCAGCGCGGGCGTAAGGAGGATATTTCGGAAATATCTCTATTACTTTATCCGGATGAAGCACCGATGACCACCGAAGAACTTTTAAGTCAACGCATTATAGCTGATATAAGTGAACAGCGTTTCGAGCGTTTCTACTCTATAACAAATGAGGTTGGATATGAGTTAAGTCTCAGTGATTCAGAAACTGAAAGTGATTCGGAATTAGAACAGGAAGTTACATCAAAGTCCTATGCTTGTGACTTGTGTGAAAAGAAGTTTGAAAGAAAGTATAAACTATTTGAACATCAAAAGTACGCGCACGTATGGTGTGAGCTGCCACATATGTGCGAAGTTTGTGATGCTAGATTCGCATCAGAAGAATTTCTACAAAGGCATCTTAAAACTCAATGCCGAAACATACGGAAGCGCTTTAATTGCCGAAAATGTCCGATGCAATTTATATGGAAAGATAATTTGAAAACTCATGAGCGCACACTGCATCCGGAAAAAGAAGATCAAAAGAAAAAGTCCGATACCAACCGATATGAGTGTGAGGAATGCCATCAAACGTTTGCTTGGCAAAAGGATTTAACCCGACATTCTATTCAACATCAACCTGAGGCAAAAGTTTTGAAGTGTCTTTGGTGTCCGCGTAAATTCTTTCGCAAAGATAAACTTAATATGCATATAAAACGTCACAATGTGACGCCGCAATGCTTGGCTGTTGCTGAAAGTCATAGCCGCGCCAGTAGCGGTCCAAATGGCAACAAAGAAATATATTGCAAAGTTTGCGATTTGAAATTTTTAAGCATTTTTTCTCTACGCGCGCATTTATTGCAGAGCTCATTTGAAAGTACCGATTTACCAAATTCCTCTGAACAACAATTTGAACCCAACCATTATGATTATAACTCATTCTTAAACTATTCCATAACAAATCATATTGGTTTTGAGTTGCATCTAGATGATTCAGAAACTGACGGAGAGGGCGTTTTCTTGCCCAAATCAGAAGGTACTCCCCTTAAATACTCCTGCGATCTTTGTCAAATGGAGTTTTTGCGCAAATATGAAGTAGTTCAGCATCAAAATAAGATCCATCCCTACGAACAATTGCCATTGAAATGCGAAAAGTGCATGTTTAAATCAGTGTCCAAGgatattttggctcatcatatgagcactcagtgcttcaatacggaaaaacaattccagtgcaatacgtgtttgtataagtttatgtggcaagagaaccttcagagtcatattcaactcatgcatccgaaagaaGCCGCGTCTAAGGGTGATGGAACGTCAAAACCAAAATTAAATAAAGCAGCTCAGCGGTCATATCAATGTGAGCTGTGCAATTGTAAGTATAATAGAAAAGACCGTCTCACCGCCCACATAAAAAAGGCTCACATAAAAGGCGAAGAAGGCGATAACCAAAATGATGCATCTGAACTTGATCCTTCGACCGGCGAACAAGTTCAGAAGCCTCCTTTAGAAAAGAAATATCTTTGTGCGTTTTGTGGACGTGCTGTCACTtcttcttccaaccttattatacatatgcgtcgtcacactggtgaaaaaccgtttaaatgtgacttttgtgatatggctttcccacgttcgtccgatttgcaatgtcatcggcgcacacatactggagaaaagccacacaagtgtaccgtctgcgataaagccttttcgcgttcctataagctgcaaacccacatgcgcattcattctggagaacgtccctacaaatgcacatattgtgagaagagttttacgcaatcaaacgatttaacgttgcatataaggcgacatactggcgagcgaccatatgtgtgtggcatatgtggtgagcgttttatacaaggcacggctctaaagaaccatcgtacaatgcgtggccattatgaggaTGTGGAGCCACGAAAATTAACAATTTTGGAACGATTTTAG
- Protein Sequence
- MGTNNLEYLRTNAKSLCRTCYQISTHLHPLYEHTEQFPLKSLADLLYDIAKIKIKPANHEDSLPAQLCTNCSRKLKNAYTFVLKAQETNEKLVQFAQLMTARTTVENMAASVTKQLDCLLEAPIDIPSKSLEFVKIKMENEFADEITFDSFSLPDQINEDFDNTVESDKVKEFFEDFEEQDEFTVVNIKRKNSDATLELKNEDSFTRCDLVHTKDPIKTEGSKRKLRSAPDTDTDNDNNCNDSDSDWEKNPKRRGAKKRKKLLDSKGRYSCEECGKTFAWKKDLKRHALIHNPYPAYQCDLCDRSFLRKDKLKDHLKVHQRRSDEASQFCGRRHPEWNFAERLYSEKRFKKAECKLCNTEFESRHLLRAHLQSHSDPDTLHMLQIDTEVVKTLNPQTTHTLNEIKSQICQDVLEQSLGKFYAIVNEYGYELSLSDTDVDQEPNVAKYECELCSETFNRKFEAFSHLKNKHANDKIPYKCIVCKVEFVCRKLFDEHTRTQCRNKEKKYQCLKCPGKFMWLENLDAHNCSNRFNSAEYKSQLPKKRELLQCKLCDKTFVWRKDLKRHVESHDASGTSHECSICLQWFLKVDNLKLHYKQAHSQIRRRIECCLCGERLSSLKQLRTHLPQHADGFSGINSQNGIFFKYFQSEYNAESVDGQPSEIAHVIANNFLQQTTAHFYLAVDESGNELDLGDSETDVESDLASADDKKAIYKCEVCGKAFARRKKILLHQYAEHGQLETLPHRCECCNKQFVCPELLENHVQSDCQNIFKKWNCSKCASRFVWEQNLQTHLTIKHFDPEQQISRKLANKLQCDDCDKTFIWPKDLNRHKRCHLPDDEKYECPLCPRRFNRKDNMQAHIKIHGAAAGLAAVCKRDSTRSGKQTKVKAVDEHLCKPHGCKLIQCMICLSKHSKITDLRTHLRTHQYVISLAQRGRKEDISEISLLLYPDEAPMTTEELLSQRIIADISEQRFERFYSITNEVGYELSLSDSETESDSELEQEVTSKSYACDLCEKKFERKYKLFEHQKYAHVWCELPHMCEVCDARFASEEFLQRHLKTQCRNIRKRFNCRKCPMQFIWKDNLKTHERTLHPEKEDQKKKSDTNRYECEECHQTFAWQKDLTRHSIQHQPEAKVLKCLWCPRKFFRKDKLNMHIKRHNVTPQCLAVAESHSRASSGPNGNKEIYCKVCDLKFLSIFSLRAHLLQSSFESTDLPNSSEQQFEPNHYDYNSFLNYSITNHIGFELHLDDSETDGEGVFLPKSEGTPLKYSCDLCQMEFLRKYEVVQHQNKIHPYEQLPLKCEKCMFKSVSKDILAHHMSTQCFNTEKQFQCNTCLYKFMWQENLQSHIQLMHPKEAASKGDGTSKPKLNKAAQRSYQCELCNCKYNRKDRLTAHIKKAHIKGEEGDNQNDASELDPSTGEQVQKPPLEKKYLCAFCGRAVTSSSNLIIHMRRHTGEKPFKCDFCDMAFPRSSDLQCHRRTHTGEKPHKCTVCDKAFSRSYKLQTHMRIHSGERPYKCTYCEKSFTQSNDLTLHIRRHTGERPYVCGICGERFIQGTALKNHRTMRGHYEDVEPRKLTILERF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01415224;
- 90% Identity
- -
- 80% Identity
- -