Basic Information

Insect: Pherbina coryleti
Gene Symbol: -
Assembly: GCA_943735905.1
Location: CALSEP010000741.1:138687-142368[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.001 0.16 13.7 0.2 1 23 107 130 107 130 0.95

2 13 0.00024 0.039 15.6 1.8 1 23 135 157 135 158 0.95

3 13 3e-06 0.00049 21.6 3.9 2 23 168 190 167 190 0.96

4 13 5.2e-05 0.0084 17.7 8.7 2 23 367 388 366 388 0.98

5 13 6.2e-05 0.01 17.5 6.2 1 23 394 417 394 417 0.95

6 13 7.5e-05 0.012 17.2 0.3 1 23 422 445 422 445 0.95

7 13 0.00019 0.031 15.9 6.7 1 23 455 477 455 477 0.98

8 13 0.00019 0.03 16.0 0.9 1 23 482 504 482 504 0.98

9 13 7.9e-08 1.3e-05 26.6 0.4 1 23 510 532 510 532 0.96

10 13 6.1e-07 0.0001 23.8 0.5 1 23 538 560 538 560 0.98

11 13 9.2e-07 0.00015 23.2 1.7 3 23 568 588 567 588 0.99

12 13 1.3e-07 2.1e-05 25.9 1.9 1 23 594 616 594 616 0.99

13 13 0.0034 0.56 12.0 0.6 1 23 621 644 621 644 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.001	0.16	13.7	0.2	1	23	107	130	107	130	0.95
2	13	0.00024	0.039	15.6	1.8	1	23	135	157	135	158	0.95
3	13	3e-06	0.00049	21.6	3.9	2	23	168	190	167	190	0.96
4	13	5.2e-05	0.0084	17.7	8.7	2	23	367	388	366	388	0.98
5	13	6.2e-05	0.01	17.5	6.2	1	23	394	417	394	417	0.95
6	13	7.5e-05	0.012	17.2	0.3	1	23	422	445	422	445	0.95
7	13	0.00019	0.031	15.9	6.7	1	23	455	477	455	477	0.98
8	13	0.00019	0.03	16.0	0.9	1	23	482	504	482	504	0.98
9	13	7.9e-08	1.3e-05	26.6	0.4	1	23	510	532	510	532	0.96
10	13	6.1e-07	0.0001	23.8	0.5	1	23	538	560	538	560	0.98
11	13	9.2e-07	0.00015	23.2	1.7	3	23	568	588	567	588	0.99
12	13	1.3e-07	2.1e-05	25.9	1.9	1	23	594	616	594	616	0.99
13	13	0.0034	0.56	12.0	0.6	1	23	621	644	621	644	0.95

Sequence Information

Coding Sequence: ATGGAACGAATTTGTCGTGTCTGTCTAAAGGGAAACATTGATCTCTTTTTGCTATTTGATGAAAATTATGCCCTGAATGGAGTTTCTTTACCGCAAATATTGACTGAGTGCACCATATATAAGGTGCACCGGCACGATGAGCTGCCGCATCAAATCTGTAGCAATTGCATGGAAGCAGCAAAAAACGCATATAGTTTTAAGAAACGCACGGAGCAATCCTATCGTCAGTTGGTGGGGCTTCTTGAGGATGTGAGCCAGGAACAATTGCAGAGTGGACAAAAATTTGAGCAATCAACACAGACGGATAAACTATCCATATATCCTTGCGAAATGTGTGATGCAAAATTCTTTGAGCCGGAAGATCTACGCAATCATCGCTTGAATTCTCACAAGGGCACAAGCTTTAAATGCAAAGTGTGCGGTCAGAAATTTGCTCGTTTGTACCGTTTAAGGGGTCATCTTGCTCTGCATCATCCAGAAGAAGGTCTAACACACGATACTAAATGTACGGTGTGTGGTAAGCAATTTTCACGCAAAGATCATATGAGGCGTCATCTGAAAAATGTGCATGGAAAGGAAGTACCCACTGTAGAACGATGTAATAAATCCACTCTAGAGGAGCCAGAAATAAACCTTAAGCATGAATTAGACGCCAAGCAGCTAACGGAAGGCATATTGAACGATACGTGCTTTACAAAAAACGAAGCCATTTGGGATAATTATTCCACAAGAGAATCCGATAGCGATGACGACTTCAATGCTACAAATCCCATATCAAGCGACTCCAACGATGATGAGAACGATGCGGAAGATGAAAAGCCTTTGAGTCTATTGAATCCAGTGAAACCACTTTTGAAGGTTGAACCTGCCGATGATGACTTATGCGAAGAACTAACAATGATAACGGAGCCTATCATAATGAAATTTGAACAAGATGGTGATGGATTTGCCAAAATTTGTGATAGCACACAAGTTGAAGATTCACAAGCAGTTGTGGCAGATGTGAAACCGTCACCAAAGAAAACTACCATTATACGTGAATATCTTGGGGATAAACCGAGTGGACGTCGACGGTCATACGTTAAAAATAAAGACAATAAATGCTCTGAATGCCAGCGTGTTTTCTCACGTCACTGTCATCTACAGCGACATATGCTAACGCATACTATGGAAAAACCACATGAATGTCCACATTGCTTAAAGCGATTCACACGTCGGGATCATTTAAAGAATCACGTCGAAAGTCAGCATGGAGACAAAAATTTCAAATGCGATCAATGTGATAGCGCATTTCCACGCAGTGACGCACTGGAACGACACAAAGCTTCCAAACACAGTGATGGACCTAATCTTAATAAAGTGCATAAGTGTGATTTTTGTGAGAAATCTTTTGTTAGCAAGAACTATTTGCGTAAACATCATCTCATGCATACCGATCGCATTTTTAGTTGCAAAATTTGCGACGATACCTTTAAAGAGCGGGCTCAATTGAGAGAGCACGAGAAAACACATAATGCAGCTCGCAATTATTTATGTTCTATTTGTGGCGAAAGCTTTGCGCGCAATGACTATTTGCGTGTACACATGCGCAGGCATACTGGTGAGAAGCCGTATAAGTGTCAATACTGCGACAAAGGTTTTCCTCGTGCTACTGATTTGAATGTTCATGTGCGTTACCACACTGGACACAAACCCAATCTCTGCACACTTTGCGGTAAAGGCTTTCATCGTGCCTACAATCTTACCATACACATGCGTACACATACTGGCGAGCGTCCATTCAAATGTGATCACTGCCCTAAGAGTTTTGCTCAAAGCAATGATTTGAAGGCTCATGTGCGTCGTCATACTGGTGAGCGATTTAAATGCAGTCACTGCGATGCAAGTTTTTTGCAGTTGTATGGTTTACGACAGCATGCATTGGTAGCACATGGCGTTCAAATAGACACTATAACAGGACGTTTGCAAAAGTTTCCCAAACTTGAGGCAAGTCCAGAAGATGTTATGCAAAGAACTCTACAGGTTGCTTTGGAAAATGCTAGAGTTCATCAGGCGCAAGAACAGGTGCAACAAGAGATTCAACAGCATGTGCCGCAGCTACCATAG
Protein Sequence: MERICRVCLKGNIDLFLLFDENYALNGVSLPQILTECTIYKVHRHDELPHQICSNCMEAAKNAYSFKKRTEQSYRQLVGLLEDVSQEQLQSGQKFEQSTQTDKLSIYPCEMCDAKFFEPEDLRNHRLNSHKGTSFKCKVCGQKFARLYRLRGHLALHHPEEGLTHDTKCTVCGKQFSRKDHMRRHLKNVHGKEVPTVERCNKSTLEEPEINLKHELDAKQLTEGILNDTCFTKNEAIWDNYSTRESDSDDDFNATNPISSDSNDDENDAEDEKPLSLLNPVKPLLKVEPADDDLCEELTMITEPIIMKFEQDGDGFAKICDSTQVEDSQAVVADVKPSPKKTTIIREYLGDKPSGRRRSYVKNKDNKCSECQRVFSRHCHLQRHMLTHTMEKPHECPHCLKRFTRRDHLKNHVESQHGDKNFKCDQCDSAFPRSDALERHKASKHSDGPNLNKVHKCDFCEKSFVSKNYLRKHHLMHTDRIFSCKICDDTFKERAQLREHEKTHNAARNYLCSICGESFARNDYLRVHMRRHTGEKPYKCQYCDKGFPRATDLNVHVRYHTGHKPNLCTLCGKGFHRAYNLTIHMRTHTGERPFKCDHCPKSFAQSNDLKAHVRRHTGERFKCSHCDASFLQLYGLRQHALVAHGVQIDTITGRLQKFPKLEASPEDVMQRTLQVALENARVHQAQEQVQQEIQQHVPQLP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01415213;
90% Identity: iTF_01415213;
80% Identity: -