Pcor024936.1
Basic Information
- Insect
- Pherbina coryleti
- Gene Symbol
- br
- Assembly
- GCA_943735905.1
- Location
- CALSEP010000962.1:593792-595282[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.9e-16 9.9e-13 48.8 0.0 2 44 302 344 301 345 0.96 2 3 0.012 24 6.0 0.0 27 37 374 384 353 390 0.85 3 3 9.4e-18 1.9e-14 54.3 0.0 3 42 412 451 410 454 0.93
Sequence Information
- Coding Sequence
- ATGAATCACCTAAAATGGATGGGACACCAATCGACTATATACGATATACAGAAGAGTCTACGCAACGACGCACATAGCTGCGAAGTGACACTTGCTGGCCGAGGCAAGTCAGTGAAGGCACATCGCTTTGTCTTATCTTCCTGTAGTGATTTGTTACGCGGACTCCTTGTGGACATACCTACAGGACAAGAGTGCACCATTATGCTACCGGACATCAAAGGTTCGCTATTAGATAGCGTGCTAGGTTTTGTGTATATGGGTGAGACATGCCTTAATTCAAACAATTTGTCGGAGTTTTTGGAAGCCATCAATCACTTGGGTATTAAGTCTGCCATCAGTTTCGAGTGCAACACCGGAATGGTAACAGCTAGCGGCGGTGGTTCACCAGATAAGTCGATAAGCTCTATGCAGATGCAAGCAGACGAAATCATCGAGGAGGAACAAGTCGCTTCATCGCCCAAGATAGAGGAACAAACTGTAATTGAGGGCAGTGATATTCAGACTTCTCGTGATCTCGAATTCCTTGACGTCTATAATGAACCGGAACAAAAAATTACTTACTCCATTGAGCATATGGCAACTGCTTCTGCCAATGAATTCATTTTAACCGAAAGCTCTGGTACATTCACTTTGACGCAGAACACAAAAATTGGGGATGGAGTTATTTCTGACAAAGTGGTAATCGAGCAAGAAGATGAAGATGCTGATGACACCGGTCATATTATGGAAGAGTACAGCTCCACTGCTGTCGTTTCCGCTGAACCAATCATAGAAATCGACAACGCAAACGATGTGCAATCTTCTACATCAAATCCTACACTTACTTCCAACGTAAAGACAAAAATAAAATTGGAAAAACAGCAAAATCATCCCATGAATGTTTTAAATGATAGTCAGATGCGTGACGAGAGTCTAGAACTGGCTGTTCAAGGAGTTCTCAACGAAGGCATGAGTCTTCAAAAGGCTGCACAAAAATATCACATATCAAAAACGGTCCTTTGGCGTCGTGTTCGCAAGCATCCCATGTATATGAAGACGACTCGAGAAAATCCTATGTTGGAAGCTGCTTGTAACCGGCTTCGTAGTGGTGAATCTCTGAAAGTTATCAGTCAGGCCCTTGACATTCCAATGTCCACATTGCATCGACACAAAGTTCGACTAGCTCAACAAGGTCGCTTGCCGGATTATATTTCGTTCAAAAAACGAGGCTCGTTTTCAAAAGAGCAACTTAAGGAAAAGCTTTCGAAAGCCGTGCAAGCTTGCCTGCACGAAGGTATGTCTCAAAATCACGCTGCGAATATGTACGATATTCCTAAGAGTACACTTTGGCGACATCTACAAAAGAGAATGAGCGATGCTCAAATGCAGGGCTTGCTGGATGACGACGATGCCATCAAAGAAGAAATAATACTATCTTGA
- Protein Sequence
- MNHLKWMGHQSTIYDIQKSLRNDAHSCEVTLAGRGKSVKAHRFVLSSCSDLLRGLLVDIPTGQECTIMLPDIKGSLLDSVLGFVYMGETCLNSNNLSEFLEAINHLGIKSAISFECNTGMVTASGGGSPDKSISSMQMQADEIIEEEQVASSPKIEEQTVIEGSDIQTSRDLEFLDVYNEPEQKITYSIEHMATASANEFILTESSGTFTLTQNTKIGDGVISDKVVIEQEDEDADDTGHIMEEYSSTAVVSAEPIIEIDNANDVQSSTSNPTLTSNVKTKIKLEKQQNHPMNVLNDSQMRDESLELAVQGVLNEGMSLQKAAQKYHISKTVLWRRVRKHPMYMKTTRENPMLEAACNRLRSGESLKVISQALDIPMSTLHRHKVRLAQQGRLPDYISFKKRGSFSKEQLKEKLSKAVQACLHEGMSQNHAANMYDIPKSTLWRHLQKRMSDAQMQGLLDDDDAIKEEIILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01022931;
- 90% Identity
- iTF_01414881;
- 80% Identity
- iTF_01181289;