Ptre018206.1
Basic Information
- Insect
- Pheosia tremula
- Gene Symbol
- -
- Assembly
- GCA_905333125.1
- Location
- HG995423.1:5125115-5128046[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.039 2.4 8.9 4.7 1 23 153 176 153 176 0.96 2 17 0.00089 0.053 14.1 1.5 1 23 185 208 185 208 0.96 3 17 0.017 0.98 10.1 0.8 2 23 221 243 221 243 0.97 4 17 0.00061 0.037 14.6 0.8 1 23 252 275 252 275 0.96 5 17 0.0011 0.065 13.8 3.9 1 23 287 310 287 311 0.96 6 17 0.00012 0.007 16.9 0.7 2 23 339 361 338 361 0.97 7 17 0.0013 0.075 13.6 1.2 2 23 371 393 370 393 0.96 8 17 0.052 3.1 8.6 0.8 2 19 398 415 397 417 0.93 9 17 0.00048 0.029 15.0 1.2 2 21 423 442 423 445 0.95 10 17 0.1 6 7.6 2.0 3 23 455 476 454 476 0.95 11 17 0.00022 0.013 16.0 2.5 1 23 481 504 481 504 0.94 12 17 0.00052 0.031 14.9 2.1 2 23 516 538 515 538 0.94 13 17 0.032 1.9 9.2 1.3 1 23 561 584 561 585 0.94 14 17 0.01 0.6 10.8 1.8 2 23 618 639 617 639 0.97 15 17 9.9 5.9e+02 1.4 2.3 3 23 647 669 645 669 0.90 16 17 0.018 1 10.0 0.1 1 23 705 727 705 727 0.97 17 17 0.076 4.5 8.0 1.9 1 23 733 756 733 756 0.97
Sequence Information
- Coding Sequence
- ATGAGAAAAAAAGTAGAAATCAAGAAGGAAATAAAATCTGAGTATGACTCTGAAAGAAACAATCCTAAGGAACGGAGAGACCCAACAACATTCCTGCCAGAAGAGCCCATGTCTTATGAGATCAAGAAGAAGAAAAAGAAGAGGCGGAAACACCAGGAGGATCCGTTTAAGGACATTGATGATAAGATGGGGATCAAGACTGAACCAGTGCTGATAACCATTGACCCAGAAGTCAATATCAAGGTGGAGAACATTGAGGTTGAGCTGGATTTTAATGATTTTGCTGATAACTCTGGTCTCTTGGTGGAGGGCCCGCACAGTGAGGATAGTCAAGAACCAGCTGTGAAAATCGAAGAAGCCAACCACGAAGCAGCCATACTAACCTTTGAGAATGTTATCAATCCTAAAACTATATTCAATTATAATGAAACACTGCCCTTAGAGCCGGCACCCACGCACATTTGCAAAGTGTGCCATCTAGTCTTCCAGTCAGGGAAAACATTACAAATGCATCAGAAAAGAAAGCATAAAATATACAGAAAGTCATTCAAACATATCTGTGATCACTGCGGTATGGCTTACGAGATGAAGAACAGCTTAGTTGCTCATATAAAGAGGAAACATGGACCTGATGCCATGCCAGACGATGGGGAAGAAAGAACATGCGATATCTGTGCTCTAGTCTTCAAAGGCATGACGCGTTTAAGGATGCACATGAGACGGAAACACGGCTTGTTTGAAGAATCCTTCACCCATATATGTGAGGACTGCGGTCTTACTTATGATAAATATAGAAGTCTCATCGTCCATATACAACGAAAGCATTCTATACATAAAAAGCCTGAGATGAACCAGTGGTTTAACTGTCCGTTCTGTCAGAAGATATTTACAAAGAGAGAAACGTATGCAAGGCACGTGCAAAGAAAGCATCATGTTCCAGAAGATACTATAAAAGAAGAAAATCTCACTGATGAATACCTACGGAGCTGTACAAACGAGCAAACAGGAGAGATAACATGCAAAGAATGCCCTCTAGTGTTTTCATCGGTGAATTTCCTGAAACTACACATGCGTAGAAAGCATAACGCATTGAGGGAAGACTTCAGATTGAAATGTAGAATCTGTAATCTGTCTTACGATAAAATCGAGAGCCTGAAAAGACATGTAAGACGAAAACACGACCAGGGATCATATTGCGAAGTGTGCAACAAGCAATTTGACACTAGAGAAATGTACTTAAACCATTCTCACGCTAAAGTTATAAGGGAATGCCATCTTTGTGGGCTCATTTTCGCGTCGCAAGGTGGTCTAGCGAAGCATATGAGGTGTACACACAAAATTGACAGTCCCAAAACTGTTTTCTGCAGTATGTGCAACGAAGGGTTCCATGACAAGCGTCAGTTGAAACCGCACTATATGAAAGTACATTTAAAAGTGTCATACCCTTGTCGATATTGTAAGAAAGTTTTTAAAGCGAAAGAGAGTTATCGCCGACACATTCTATTCAAACATCCGACGGCAAATCATTTTGTAACGCACATGCAAAAGTGTGAACAGTGCACAGAAACATTTAAAGATGAATTTGAATTGTGTAAACACATTAACTTTGTACATAGACACAGTGAAGAGGATAATAAACAGATTGAGATCAAAAAGGAAGAGGCAGACATCAAAGACACGTTTAGATGCACTAAGTGTCCTGAAATATACCTTACGTGGGAACAGTTACGGTTGCATTATGAACAAAATCACCATAACATCCAAGACACCCAATGTCAGATGTGTGGGGAAATAATGCCGGGGAATGAGCTGCAGAAACATATAAAAAATACCCACACCGACACAGAAATGAAATGCAATTATTGCGAGTTCAAAACCAAGATACGAGTGTCTCTTACGCAGCACATGTTGAGGCACAAGAATGCCAGAACCATGCACTGTGACTTCATGGGATGTAAGTATAAAACGTTCTACGAAGTTGCTATGGAGAAGCACAAGCGGAGGCATGCAGACTTGGGGCTCAAACTTCAGTGCACCCAGTGTCCGTTCCAAACGATGAACAAATATATATTGAAGTATCACGAAGAGGCCCACGAAACTGGGAAGAAGAGATATATGTGCGACCAGTGTGACTATGCTACGATCTTACCCGCGAATTTAGTACAACACAAGTACAAACATTCGACAGAAAAGCGGTTTAAATGTGAGGTGTGTCCGTTTGCAACGAAGTACAATACGTCGTTGAGGTTCCACGTTAGAAAGAAACACTGTGATCTTCCTACGTTCAGTTGA
- Protein Sequence
- MRKKVEIKKEIKSEYDSERNNPKERRDPTTFLPEEPMSYEIKKKKKKRRKHQEDPFKDIDDKMGIKTEPVLITIDPEVNIKVENIEVELDFNDFADNSGLLVEGPHSEDSQEPAVKIEEANHEAAILTFENVINPKTIFNYNETLPLEPAPTHICKVCHLVFQSGKTLQMHQKRKHKIYRKSFKHICDHCGMAYEMKNSLVAHIKRKHGPDAMPDDGEERTCDICALVFKGMTRLRMHMRRKHGLFEESFTHICEDCGLTYDKYRSLIVHIQRKHSIHKKPEMNQWFNCPFCQKIFTKRETYARHVQRKHHVPEDTIKEENLTDEYLRSCTNEQTGEITCKECPLVFSSVNFLKLHMRRKHNALREDFRLKCRICNLSYDKIESLKRHVRRKHDQGSYCEVCNKQFDTREMYLNHSHAKVIRECHLCGLIFASQGGLAKHMRCTHKIDSPKTVFCSMCNEGFHDKRQLKPHYMKVHLKVSYPCRYCKKVFKAKESYRRHILFKHPTANHFVTHMQKCEQCTETFKDEFELCKHINFVHRHSEEDNKQIEIKKEEADIKDTFRCTKCPEIYLTWEQLRLHYEQNHHNIQDTQCQMCGEIMPGNELQKHIKNTHTDTEMKCNYCEFKTKIRVSLTQHMLRHKNARTMHCDFMGCKYKTFYEVAMEKHKRRHADLGLKLQCTQCPFQTMNKYILKYHEEAHETGKKRYMCDQCDYATILPANLVQHKYKHSTEKRFKCEVCPFATKYNTSLRFHVRKKHCDLPTFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01426137;
- 90% Identity
- iTF_00622237;
- 80% Identity
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