Ptre018235.1
Basic Information
- Insect
- Pheosia tremula
- Gene Symbol
- -
- Assembly
- GCA_905333125.1
- Location
- HG995423.1:5755727-5758712[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00049 0.029 14.9 0.8 1 23 238 261 238 261 0.97 2 18 5.3e-05 0.0032 18.0 5.9 1 23 266 288 266 288 0.99 3 18 4.3 2.6e+02 2.5 0.1 2 23 292 313 292 313 0.89 4 18 0.05 3 8.6 2.7 1 23 318 341 318 341 0.96 5 18 0.00094 0.056 14.0 0.9 2 23 402 424 401 424 0.96 6 18 0.00086 0.051 14.2 0.8 1 23 430 453 430 453 0.93 7 18 0.00025 0.015 15.9 0.8 2 22 457 477 456 477 0.94 8 18 0.0055 0.33 11.6 0.2 1 19 485 503 485 508 0.94 9 18 9.6 5.7e+02 1.4 1.9 1 23 513 536 513 536 0.91 10 18 0.002 0.12 13.0 0.2 2 23 549 570 548 570 0.96 11 18 0.0036 0.21 12.2 1.5 1 23 576 598 576 598 0.97 12 18 0.0018 0.11 13.2 5.9 1 23 634 656 634 656 0.97 13 18 0.013 0.78 10.5 0.9 3 23 662 682 661 682 0.93 14 18 0.00047 0.028 15.0 1.3 2 23 701 723 700 723 0.96 15 18 0.00029 0.017 15.7 1.0 1 23 729 751 729 751 0.98 16 18 0.0011 0.063 13.9 6.0 2 23 758 779 757 779 0.96 17 18 1.9e-05 0.0011 19.4 1.4 1 23 785 808 785 808 0.97 18 18 3.1 1.9e+02 3.0 0.4 3 23 815 836 815 836 0.95
Sequence Information
- Coding Sequence
- ATGAATGGAACGGATGAACCAGCAACAACTGCCCAAAGCGAATCAGAATGGCTGAAGCACAAACTTCAGGCAATTTTCACATCTTCCAAATTCTGTGGCCTGTGTCTAGAGAGCAATGGAAATCTATGTTCAGTGTTCATAGAGCTGGTTATAAGTAAACAAGCGTTTTCGAAGAGTCTCTACGATATCATCAATTATGTTTTCAATGATGATATCGAAAACTTTATGTCCAGTCAAGTACTGTGCGACAGTTGCTTAGAAAAGACAATACAATCTTATCTTTTTATACACAACGCTAAACAGATGTCGAGAGTCGTCCACAACTGCATCTGTGATATAGACTCAAAAGTAATAGATGTAAACACTCAACTCGACCAAGAAGCCAATTATACTAATGCCAACGTAATGGTAGTACTAGAAAATGATCCAGAACTATATAGAAATATTGTCGATTTGCAATCTGTTGAAGTTGTTCCAACAACAATACCTAAAGTCATGATAAAAGAGGAAACGATCAAGCTCGAAGTACCGATAAAAAAGGGAATCGCACCGAAATTTATTTCTAAAAAAAGAGAAATATCCAAAGGCACAGCAAGGAAGAAAATAAATGTTGCAAAACCTGAAGGCACTCCTAATATAACACTCAAAGCGGGGAAAATTGTTATAAAACCTTTGAGCTCGTCGAAAACTGCGATTCCTCATTATAATACCTACGAGTGCTCTGGCTGTTCGGAGATATTCACCAATTACAGACTTCTAAAAGAACACGAGAAATCAAAACATAAAACGTCTGTGTTTCGATGTAAGTTGTGCGATAAATGTTATAACACGCAACAGTATCTGAATATTCATTACAAGACTCACGATAGGGCGAGGTGCAAGATATGCCAAGTGATCCTGCCCGAGGAAGACTTGATGGAACATTTGAGGAGCAATCACGCGAACTTGGTTTACTGCTGTCAAGTTTGCAAGCTAGTTTATTACTCGCAAGAGTCCTTGGACACGCATTTCAAGATCACCCATTTAACTAACGACACAAAAGCTAAGACGCAATGCATTATGTGTTTAAGAAATTTCCCAGAAAATGAATTAAAAACTCATCGATGCAAATTCTCGTGTTCCGAATGTTTCGTGGCGCCTTGCATTCATTATAGATACTTGAAATCGTTCAGAGAACAGGTACTTAATCACGTGAATAAAATAGAATGTAAAGATTGTGATTACCAAACTCGGAGGAAGGAACATTTGATCGGGCACGTTAATCGAGAGCACTTAGATCACCACCCGTTCACTTGCGCTGTATGCGGACAACAGTTCTACACCAAACTAAGTTTAAAAACCCACATAGTTCAATTTCATGAAGACCTTTCATGCGAATACTGCGACTTTAAGTTCAAAGATAATAATACTCTGGAAAATCATAGGAGATCTTGTAAGTTAGTCACAAGACATTTTGAATGCAATCAGTGCGATGCGTCCTTTGATTTAGCAGAAGAGTTGCAAAGACATGACAATTTAAGGCACAGTGAAGGCGGTCACGCTTGCAACCTGTGCAAAAGCAAGTTTTTAACGCCAATGGAACTAGACCAACACCACGCAAGAGTGCACGGCGGCATCCAATACAAGAAGAGACGAAAGCATATCGAATGTTCCTTGTGCGACGAATTCTTTAACAACTTAAAAGAGTTGATGGAACACGAGAAGCTACACAGCCCTGACGATGTGTATCCTTGTAAATTGTGTCCAAAGTACTTTGATACTTTGAAAAAATTGTATGTTCACAATCAGAAACACTATACCCTGAGGATAACGTGTCCGGGATGCGAAAAGAAGGTCGCGGCGTCATTCTACACGCAACACTCGGCGCGATGCTCCTACAAAAAGGACACGGCTAAGAGTCACGTGTGCGAAAAGTGTGGAAAGTTCTTCAACTCAAAATCGATGCTCCATTTCCATCTAAGGTCCCACGTGGACCCGGAGCCGTGTCCGAAATGCCATAAAGTCCTGAAACCGAATAGTTTGAAAAATCACATGGAACAAGTGCACGGGGAGCACAGCGATAGAGTACGAAAAAGTTATCCAACTAACAAACCATCGTTGAAATGCCAAATGTGTGGTCACATTGTGAGAAAGAAGACCGAACTAGAGGCGCACATGAACCGATACCATTTGAAAATAAAGCCTTACGTTTGTAGTGTATGCAAAAAAGCGTTCTGCGGTCAAGTCCGTTTGAAAGAACATTTGGCTACGCACACATCTGATAATACTTGTTTCTGTTCAATATGCGGGAAGAAGTTCGCCAATCGTGTTTGTCTTAAGATGCACTTCAGGATGCACACAGGAGAAGCGCCGTACCCCTGTGACATTTGCGGTCAGAAGTTCCGTTCTTCCAGCATGATGAAGACACACAGGCTGAAGAAACATCTGGAGAAAACTGTAGGCTGCCCGCTTTGTGACAGTATGTTCTATGTGGTAAGAGAAATGAGATACCACTTCAAGAAGATACATTGGAAATACAGGGATAGGCCATTTAACCCCCGCGAAGTGGAGGAACTGGATAAGGCATACTATTATTTATTTGAAGACGGGAGATTGCCCAAAGTTAGAGAGAATGAGTGA
- Protein Sequence
- MNGTDEPATTAQSESEWLKHKLQAIFTSSKFCGLCLESNGNLCSVFIELVISKQAFSKSLYDIINYVFNDDIENFMSSQVLCDSCLEKTIQSYLFIHNAKQMSRVVHNCICDIDSKVIDVNTQLDQEANYTNANVMVVLENDPELYRNIVDLQSVEVVPTTIPKVMIKEETIKLEVPIKKGIAPKFISKKREISKGTARKKINVAKPEGTPNITLKAGKIVIKPLSSSKTAIPHYNTYECSGCSEIFTNYRLLKEHEKSKHKTSVFRCKLCDKCYNTQQYLNIHYKTHDRARCKICQVILPEEDLMEHLRSNHANLVYCCQVCKLVYYSQESLDTHFKITHLTNDTKAKTQCIMCLRNFPENELKTHRCKFSCSECFVAPCIHYRYLKSFREQVLNHVNKIECKDCDYQTRRKEHLIGHVNREHLDHHPFTCAVCGQQFYTKLSLKTHIVQFHEDLSCEYCDFKFKDNNTLENHRRSCKLVTRHFECNQCDASFDLAEELQRHDNLRHSEGGHACNLCKSKFLTPMELDQHHARVHGGIQYKKRRKHIECSLCDEFFNNLKELMEHEKLHSPDDVYPCKLCPKYFDTLKKLYVHNQKHYTLRITCPGCEKKVAASFYTQHSARCSYKKDTAKSHVCEKCGKFFNSKSMLHFHLRSHVDPEPCPKCHKVLKPNSLKNHMEQVHGEHSDRVRKSYPTNKPSLKCQMCGHIVRKKTELEAHMNRYHLKIKPYVCSVCKKAFCGQVRLKEHLATHTSDNTCFCSICGKKFANRVCLKMHFRMHTGEAPYPCDICGQKFRSSSMMKTHRLKKHLEKTVGCPLCDSMFYVVREMRYHFKKIHWKYRDRPFNPREVEELDKAYYYLFEDGRLPKVRENE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01073843;
- 90% Identity
- iTF_01179715;
- 80% Identity
- -