Ndro011861.1
Basic Information
- Insect
- Notodonta dromedarius
- Gene Symbol
- -
- Assembly
- GCA_905147325.1
- Location
- LR990184.1:7690612-7693788[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00084 0.057 14.1 0.7 1 23 237 260 237 260 0.95 2 18 0.00027 0.018 15.7 6.4 1 23 265 287 265 287 0.99 3 18 1.7 1.2e+02 3.7 0.3 2 23 291 312 291 312 0.92 4 18 0.031 2.1 9.2 2.7 1 23 317 340 317 340 0.96 5 18 0.0046 0.31 11.8 0.6 2 23 401 423 400 423 0.95 6 18 0.00061 0.042 14.6 1.6 1 23 429 452 429 452 0.93 7 18 0.0016 0.11 13.3 0.5 2 21 456 475 455 476 0.94 8 18 0.025 1.7 9.5 0.3 1 19 484 502 484 507 0.94 9 18 0.00098 0.067 13.9 0.3 2 23 548 569 547 569 0.96 10 18 0.036 2.4 9.0 1.3 1 23 575 597 575 597 0.97 11 18 0.77 52 4.8 0.1 2 15 603 615 602 621 0.75 12 18 7.4e-06 0.0005 20.6 4.1 1 23 633 655 633 655 0.98 13 18 0.014 0.97 10.3 0.1 3 23 661 681 660 681 0.93 14 18 0.00053 0.036 14.8 2.2 2 23 702 724 701 724 0.96 15 18 0.00093 0.063 14.0 4.2 1 23 730 752 730 752 0.98 16 18 0.001 0.068 13.9 6.0 2 23 759 780 758 780 0.96 17 18 3.3e-05 0.0023 18.5 1.5 1 23 786 809 786 809 0.96 18 18 0.44 30 5.6 1.3 2 23 815 837 814 837 0.95
Sequence Information
- Coding Sequence
- ATGAGCGACGTCGAAGAAACTCCAACTGCCCAAAGCGAAACAGAGTGGCTGAAGCAGAAGCTCCAGACTATTTGTACATCTTCCAAATTCTGTGGCCTCTGTCTGGAAAGCAGTGGAAATTTGTGCTCTGTGTATATAGACCTGGTTATAGGCAAGCAAGCCTACTCGAAGAGCTTATATGATATCCTCAATTATGTTTTCAATGATGATATCGAGAACTTCATGTCTACTCGACAGTTATGCGACAATTGCTTAGAAAAGACTATACAGTCTTATCTGTTCGTACACAACACCAAACAAATGTTCAGAGTAATCCATAACTGCATCAGCGACATTGACTCCAAAGTCATTGATGTCAACGCCCAACTCGACACTGACGTCGATTACTCCAACGCCAACGTAATGGTAGTACTAGAAAATGACCAGGAGCTGTATAAACACATTGTTGATTTACAGTCCGTTGAGGTTGTACCATCAGCAATACCCGTAGTCAAGAAAAAAGATTCAGAAAATAAGCCTCAAGTATCAATACAGGAAACCACAGATAAATTGATTTCGAAAAAGGTAGAAATGCCTAAAGAAAAATTATTGATCAAGAAAATTAAAATAGAGAAAAACGAAGGCACCCCTAATATAACACTCAGAGCGGGGAAAATTGTTATACGACCTTTGAGCTCGTCGAAAACCGCAACACCACATTATAATACCTACGAGTGCTCTGGTTGTTCAGAAATATTCACCAACTACAGACTGTTAAAAGAACATGAGAAATTGAAACATAAAACGTCTGTATTTCGATGTAAACTATGCAATAAATGTTATAATACTCAACAATATCTGAGTATTCATTATAAGACTCACGAGAGAGAAAGATGCAAGATTTGCCAAATGATTCTGCCGAAGGAGGACTTATTGGAACATTTGAGAAATAATCATGTGAACTCTGTATATTGTTGCCAGGTTTGCAAGCTAGTTTATTACTCGCAAGACTCTTTGGACACGCATTTTAAGATTACTCATTTGAACAATGCTACTAAAGCTAAGACGCAATGTATAATGTGCTTAAGAAACTTTTTAGAGAATGAAGTAAAGACTCATAGATGCAAGTTCTCTTGTTCTGAATGTTTTATAATGCCCTGTATTCATTACAAATACTTAAAATCGTTCAGAGAGCAGGTTCTAAATCACGTGAACCAAATAGAATGTATGGATTGTGATTACCAAACGCGAAGAAAGGAACATTTGATTGGGCACGTTAATCGTGAACATCTAGATCACCATCCGTTTACTTGCGACACATGCGGACAACAATTCTATACTAAACTAAGTTTGAAGACCCACATAGTTCAATTTCATCAAGATCTTTATTGTGAATACTGCGACTTTCAATTTAAAGATAATAATACACTGGAAAGTCATAGGAAAGCTTGTAAATTAGTTACTAGGATATTTAAATGCCAGTGGTGCGATGCATCCTTTGATTTAGAAGAAGAGTTGGAGAAACATGACAATTTAAGGCACAGTGAAGGTGGTCATGCTTGTAAACTATGCAAGAGCAAGTTCTTAACGCAAATGGAACTAGACCAGCACCACGCAAGAGTACACGGCGGTATTCAATGCAAGAAGAGGAGAAAGCACATCGAATGTTCGTTATGCGACGAATTCTTCAAGAACTTAAAAGAACTGATGGATCATGAGAAGTTACACAGCCCTAAGGATTTGTTCCCTTGCAAATTGTGTCCAACATACTTTGACAGTTTAAAAAAATTGTACATACATAATCAGAAGCACTACACTCTGAGGATAACATGTCCTGGCTGCGATAAGAAAGTCGCGTCGTCATACTTCACACAACACTCCGCGAAATGTTCTTATATGCGGGAATCTGCGAGGAGTCATGTCTGTGATAAATGTGGAAAATTCTTTAACTCTGAATCATTGCTTCATATCCACCAAAGAACGCATATGGACCGGGAGCCCTGTCCTCAATGCGATAAAATCTTGAAACCGAATAGTCTGAAAAAACACATGGAACTAATTCACGGGGAATTCAATGAAAGAAAACGAAAACAAAAAATGATTTTGTTTAACAAAGCATCGATAGAATGCCAACACTGCGGTCACATCGTCAGGAAAAAGACTGATCTAGAGGCTCACATGAACAGGTTCCATTTGAAAATTAAGCCCTATGTTTGTCATGTGTGTAAAAAGGCATTCTGTGGTAAAGTACGATTGAAAGATCATTTGACGACACACACTTCTGATAATGCTTGCTTTTGCTCCATATGTGGAAAGAAATTCGCGAATCGAGTATGTCTTAAAATGCACTTTAGGATGCACACGGGGGAATCTCCATATGCCTGTGACATTTGCGGTCAGAAGTTCCGTTCTTCGAGCATGATGAAAACGCACAGACTGAAGAAGCATATGGAGAAAACCGTAAGCTGTCCGCTTTGTGATAATATGTTCTATATGGTAAGGGAAATGAGACACCACTTCAAAAAAGTACACTGGAAATACAAGGATAGGCCTTTCAACCCACGCGATGTAGAAGAATTGGATCAAGCGTATTATCATTTGTTTGAAGATGGGCGGTTACCAAAAGTTACGCAAAATGAGTGA
- Protein Sequence
- MSDVEETPTAQSETEWLKQKLQTICTSSKFCGLCLESSGNLCSVYIDLVIGKQAYSKSLYDILNYVFNDDIENFMSTRQLCDNCLEKTIQSYLFVHNTKQMFRVIHNCISDIDSKVIDVNAQLDTDVDYSNANVMVVLENDQELYKHIVDLQSVEVVPSAIPVVKKKDSENKPQVSIQETTDKLISKKVEMPKEKLLIKKIKIEKNEGTPNITLRAGKIVIRPLSSSKTATPHYNTYECSGCSEIFTNYRLLKEHEKLKHKTSVFRCKLCNKCYNTQQYLSIHYKTHERERCKICQMILPKEDLLEHLRNNHVNSVYCCQVCKLVYYSQDSLDTHFKITHLNNATKAKTQCIMCLRNFLENEVKTHRCKFSCSECFIMPCIHYKYLKSFREQVLNHVNQIECMDCDYQTRRKEHLIGHVNREHLDHHPFTCDTCGQQFYTKLSLKTHIVQFHQDLYCEYCDFQFKDNNTLESHRKACKLVTRIFKCQWCDASFDLEEELEKHDNLRHSEGGHACKLCKSKFLTQMELDQHHARVHGGIQCKKRRKHIECSLCDEFFKNLKELMDHEKLHSPKDLFPCKLCPTYFDSLKKLYIHNQKHYTLRITCPGCDKKVASSYFTQHSAKCSYMRESARSHVCDKCGKFFNSESLLHIHQRTHMDREPCPQCDKILKPNSLKKHMELIHGEFNERKRKQKMILFNKASIECQHCGHIVRKKTDLEAHMNRFHLKIKPYVCHVCKKAFCGKVRLKDHLTTHTSDNACFCSICGKKFANRVCLKMHFRMHTGESPYACDICGQKFRSSSMMKTHRLKKHMEKTVSCPLCDNMFYMVREMRHHFKKVHWKYKDRPFNPRDVEELDQAYYHLFEDGRLPKVTQNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01180540; iTF_01179715;
- 90% Identity
- -
- 80% Identity
- -