Basic Information

Insect: Pheosia tremula
Gene Symbol: PLAGL2
Assembly: GCA_905333125.1
Location: HG995425.1:3049483-3052517[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.037 2.2 9.0 1.5 1 23 26 49 26 49 0.94

2 18 0.0022 0.13 12.9 1.4 2 23 121 142 120 142 0.97

3 18 5.9e-05 0.0035 17.8 0.1 1 23 146 168 146 168 0.98

4 18 0.13 7.9 7.3 3.1 1 23 173 196 173 196 0.86

5 18 0.00054 0.032 14.8 0.2 2 23 204 226 203 226 0.95

6 18 1.1e-05 0.00065 20.1 3.1 2 23 234 256 233 256 0.96

7 18 0.0003 0.018 15.6 2.6 1 23 262 284 262 284 0.97

8 18 4.9e-05 0.0029 18.1 2.3 1 23 290 312 290 312 0.98

9 18 0.79 47 4.8 2.9 1 23 392 415 392 415 0.93

10 18 0.1 6 7.7 0.7 3 23 443 464 442 464 0.94

11 18 0.0017 0.1 13.2 1.0 2 23 487 508 486 508 0.97

12 18 0.00086 0.051 14.2 0.2 1 23 512 534 512 534 0.98

13 18 0.038 2.3 9.0 2.2 1 23 539 562 539 562 0.86

14 18 0.00035 0.021 15.4 0.2 2 23 570 592 569 592 0.95

15 18 0.00029 0.017 15.7 2.3 2 23 600 622 599 622 0.95

16 18 0.0001 0.0061 17.1 2.9 1 23 628 650 628 650 0.98

17 18 0.00012 0.0071 16.9 2.8 1 23 656 678 656 678 0.99

18 18 3.1e-05 0.0018 18.7 5.3 1 23 684 707 684 707 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.037	2.2	9.0	1.5	1	23	26	49	26	49	0.94
2	18	0.0022	0.13	12.9	1.4	2	23	121	142	120	142	0.97
3	18	5.9e-05	0.0035	17.8	0.1	1	23	146	168	146	168	0.98
4	18	0.13	7.9	7.3	3.1	1	23	173	196	173	196	0.86
5	18	0.00054	0.032	14.8	0.2	2	23	204	226	203	226	0.95
6	18	1.1e-05	0.00065	20.1	3.1	2	23	234	256	233	256	0.96
7	18	0.0003	0.018	15.6	2.6	1	23	262	284	262	284	0.97
8	18	4.9e-05	0.0029	18.1	2.3	1	23	290	312	290	312	0.98
9	18	0.79	47	4.8	2.9	1	23	392	415	392	415	0.93
10	18	0.1	6	7.7	0.7	3	23	443	464	442	464	0.94
11	18	0.0017	0.1	13.2	1.0	2	23	487	508	486	508	0.97
12	18	0.00086	0.051	14.2	0.2	1	23	512	534	512	534	0.98
13	18	0.038	2.3	9.0	2.2	1	23	539	562	539	562	0.86
14	18	0.00035	0.021	15.4	0.2	2	23	570	592	569	592	0.95
15	18	0.00029	0.017	15.7	2.3	2	23	600	622	599	622	0.95
16	18	0.0001	0.0061	17.1	2.9	1	23	628	650	628	650	0.98
17	18	0.00012	0.0071	16.9	2.8	1	23	656	678	656	678	0.99
18	18	3.1e-05	0.0018	18.7	5.3	1	23	684	707	684	707	0.98

Sequence Information

Coding Sequence: ATGCATTTACATAACATTAGAACGATACTCTTGAACTCAAACGCGACGCCGATAAGGAGCCACGGAGGCTTCGGATACAAGTGTTGCTACTGTGACGAGCAGTACCTCAATCCGGCGGAGCTCAAAGTTCATACAATATACAGACATGGCAGCACAGCCATAAGCAAATTCATGAAAGGTACCCGTATGCTTTCATTTGTCGTCAAACTGGACATCACTGAACTAACTTGCCGGATCTGTAGTGAAAAAATTGATATATTCGAAGATTTTATAGATCATTTGATAGACGAGCACGATAAAAAAATATTTGATGGCATCAAAAACCATGTACTGCCGTTCAAATTTGATAGCGACGCGCTCAAGTGCGTAATATGTTCTATAAATTTCGACCATTTCAAATTACTGCAAGAACACATGAACTCGCACTACAGTAACTACGTTTGCAAGATTTGCAACACACCGTTCGTTAACAAAAATCTTTTAGGGAACCATATAGCTCGGCACAAACAAGGAGAATTTCAATGCTCCTTCTGCCCTAAAGTGTTCGACACTCATCCCAAGAAGTCCAACCACGAGAAGTTCGTACACATCACCGACCAAAGACGCAACAAATGTCCGATCTGCGGGGAGAAGTTCGTGAGTTACGCCAACAAGAACTATCACATGGTGAGAGAGCATGGGACCGAACCTCTTATACTGAAATGTAAGGCTTGCGACAAGACATTTACTAGGCAAGACAAATTGTTCAGACACACGAAACGAGACCACTTGTTGGAGCGACGGTTCGAATGTGAGCACTGTGATATGAAGTTCTATGAGAAGAGGGATCTCAGTAGCCATATGGTTAAGCATACAGGACTTAAGGAGCATAGGTGCGAGCTTTGCTTGAAGGCGTTCGGGAGGAAGTATACGCTGCAGCAGCATTTGAGGATACACGCGGATGATAGGAGATTCAAATGTACAGGCTGCAATACAGAAATTAAATTAGAGCCAGCTGTAAGTAAAGTCACAAGTAAAGCATTAAACGATTGGACTGTTACCATCAAACAAAGATGTCCAAAGAAAGAACAGTCTGTAAGAACTTACAAGGAGATAGATATGCATTTACATAACGTCAGAACGATACTCTTACATTCCAACGCGACGCCAATAAGAAGCCACGGAGGTTTCGGATACGCGTGTTGCTTCTGCAAAGACCACTACGTGAATGCGTCTGAACTCAAAATTCATACCATAAACACGCACGGTAGCACAGATATTAGCAAATTCATGAAAGGTACCCCTATGCTGACATACGTCGTCAAATTAGACATCACTGGATTACTTTGCAAGATCTGTAAGAAACATATTAATAATTTAGATGCTTTGGTCGATCATTTAACAAATGAACACAATAAAAAGATATTTGACGATATCGATAATCATATTATACCGTTTAAATTCGATAGCGATAAACTCAAATGCGTGATCTGTTCCATCAACTTCGATCATTTCAAGTTACTACAAGAGCACATGAACGTACACTATAGGAACTACGTTTGCAGGCTTTGCAACGCACCGTTTGTTAACAAACGTACTTTAGGGAGTCACATGGCTCGGCACAAGCAGGGAGAGTTTCCCTGCACCTACTGCCCTAAAGTGTTCGACACTCATCCCAAGAAATCAAACCACGAGAAGTTCGTACACATCTCAAATCAAAAGCGTAACAAATGTCCGATCTGTGGGGAGAAATTCGTGAGTTACGCGAACAAGAACGATCACATGGTCAAAGAGCATGGGGCTGAACCGCTTATACTCAAATGTATGGCGTGCGATAAGACGTTTACTAGACGGGACAGACTATCGAGGCATACGAAACGAGACCATTTGATGGAGAGAAGGTTCGAATGTGATCACTGCGATATGAAGTTCTACGGAAAGAAGGATCTTCGTACGCACATGGTGAAGCATACAGGGGTAAAAGATTATAGGTGTGATTTTTGCTTGAAGGCATTTGGGAGAAGGCACACGTTGAAGGAACATTTGCGGATACACGCCGATGATAGGAGATTCAAATGTGAGCATTGTGGACAGGCGTTTGTGCAGAAGTGTAGCTGGAAGAGTCATATGCGGTCGAAGCATGGGGAGTACGTGTAG
Protein Sequence: MHLHNIRTILLNSNATPIRSHGGFGYKCCYCDEQYLNPAELKVHTIYRHGSTAISKFMKGTRMLSFVVKLDITELTCRICSEKIDIFEDFIDHLIDEHDKKIFDGIKNHVLPFKFDSDALKCVICSINFDHFKLLQEHMNSHYSNYVCKICNTPFVNKNLLGNHIARHKQGEFQCSFCPKVFDTHPKKSNHEKFVHITDQRRNKCPICGEKFVSYANKNYHMVREHGTEPLILKCKACDKTFTRQDKLFRHTKRDHLLERRFECEHCDMKFYEKRDLSSHMVKHTGLKEHRCELCLKAFGRKYTLQQHLRIHADDRRFKCTGCNTEIKLEPAVSKVTSKALNDWTVTIKQRCPKKEQSVRTYKEIDMHLHNVRTILLHSNATPIRSHGGFGYACCFCKDHYVNASELKIHTINTHGSTDISKFMKGTPMLTYVVKLDITGLLCKICKKHINNLDALVDHLTNEHNKKIFDDIDNHIIPFKFDSDKLKCVICSINFDHFKLLQEHMNVHYRNYVCRLCNAPFVNKRTLGSHMARHKQGEFPCTYCPKVFDTHPKKSNHEKFVHISNQKRNKCPICGEKFVSYANKNDHMVKEHGAEPLILKCMACDKTFTRRDRLSRHTKRDHLMERRFECDHCDMKFYGKKDLRTHMVKHTGVKDYRCDFCLKAFGRRHTLKEHLRIHADDRRFKCEHCGQAFVQKCSWKSHMRSKHGEYV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01179680;
90% Identity: iTF_01179680;
80% Identity: -