Basic Information

Insect: Pheosia tremula
Gene Symbol: -
Assembly: GCA_905333125.1
Location: HG995427.1:2287236-2295261[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 2.3e-06 0.00014 22.2 5.9 1 23 277 299 277 300 0.96

2 19 0.00012 0.0073 16.8 6.0 1 23 306 328 306 328 0.96

3 19 3.1e-05 0.0018 18.7 4.4 1 23 334 356 334 356 0.98

4 19 2.9e-06 0.00017 21.9 0.1 1 23 362 384 362 384 0.97

5 19 1.1e-06 6.7e-05 23.2 1.1 2 23 391 412 390 412 0.97

6 19 5.6e-06 0.00033 21.1 0.3 1 23 418 440 418 440 0.97

7 19 1e-05 0.00059 20.3 0.5 1 23 446 468 446 468 0.99

8 19 0.23 14 6.5 0.2 1 11 474 484 474 487 0.91

9 19 1.4e-06 8.6e-05 22.9 0.9 1 23 589 611 589 611 0.98

10 19 0.077 4.6 8.0 6.7 1 23 617 640 617 641 0.96

11 19 8.5e-06 0.00051 20.5 2.8 1 23 647 669 647 669 0.98

12 19 7.5e-05 0.0045 17.5 0.7 1 23 675 698 675 698 0.98

13 19 3.1e-06 0.00019 21.9 2.1 1 23 704 726 704 726 0.98

14 19 5e-07 3e-05 24.3 1.0 1 23 732 754 732 754 0.98

15 19 0.00012 0.0074 16.8 0.3 1 23 760 782 760 782 0.95

16 19 3.8e-06 0.00023 21.6 0.6 1 23 788 810 788 810 0.99

17 19 1.2e-07 7.4e-06 26.3 0.5 1 23 816 838 816 838 0.99

18 19 2.7e-07 1.6e-05 25.2 2.2 1 23 844 866 844 866 0.99

19 19 3.5e-07 2.1e-05 24.8 0.4 1 23 872 894 872 894 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	2.3e-06	0.00014	22.2	5.9	1	23	277	299	277	300	0.96
2	19	0.00012	0.0073	16.8	6.0	1	23	306	328	306	328	0.96
3	19	3.1e-05	0.0018	18.7	4.4	1	23	334	356	334	356	0.98
4	19	2.9e-06	0.00017	21.9	0.1	1	23	362	384	362	384	0.97
5	19	1.1e-06	6.7e-05	23.2	1.1	2	23	391	412	390	412	0.97
6	19	5.6e-06	0.00033	21.1	0.3	1	23	418	440	418	440	0.97
7	19	1e-05	0.00059	20.3	0.5	1	23	446	468	446	468	0.99
8	19	0.23	14	6.5	0.2	1	11	474	484	474	487	0.91
9	19	1.4e-06	8.6e-05	22.9	0.9	1	23	589	611	589	611	0.98
10	19	0.077	4.6	8.0	6.7	1	23	617	640	617	641	0.96
11	19	8.5e-06	0.00051	20.5	2.8	1	23	647	669	647	669	0.98
12	19	7.5e-05	0.0045	17.5	0.7	1	23	675	698	675	698	0.98
13	19	3.1e-06	0.00019	21.9	2.1	1	23	704	726	704	726	0.98
14	19	5e-07	3e-05	24.3	1.0	1	23	732	754	732	754	0.98
15	19	0.00012	0.0074	16.8	0.3	1	23	760	782	760	782	0.95
16	19	3.8e-06	0.00023	21.6	0.6	1	23	788	810	788	810	0.99
17	19	1.2e-07	7.4e-06	26.3	0.5	1	23	816	838	816	838	0.99
18	19	2.7e-07	1.6e-05	25.2	2.2	1	23	844	866	844	866	0.99
19	19	3.5e-07	2.1e-05	24.8	0.4	1	23	872	894	872	894	0.99

Sequence Information

Coding Sequence: ATGGAAAACCTGGGTATTTGTCGTATTTGTCTGAATAAGGATGTTCAGCACGTAGTAAAGAGTCCGCAGCTGCAAGATATTTATGAAAAACTTACAACAATACCGTTTCAGGCTGACGAGAGACCACTGGCGTTATGCTACATATGTTTTGCACAACTGAAAACCTCGCACAGATTCATGCTCAAGTGTCTGAAGGCTGAAGAGCTCCTCGCAAAGATGCTGACCAATGAGGATGGGGCGAGTATCATACCAGCACACCTGCAATCTCTTGAGGGCTCAGCAGAGATTTGCCATTTTACGACAACAAGTTACTGTTTGTGCGATCGCCCAGAGTCAGTTGATAGTACAGATTCAGAACCTGACATTGAACAGACTCCCTCGGATCCGGGAGACGATATACCTTTGTGTACTATAAAGAAGGAGTTGGAAACGGAAATTGAATTGGAGGAAGAGGAAGCGGAGGACGTGGAGATGGAGGAAGCGGTGAACAGAAAGAGAAAGAGTCAACGCAACACATTAAAGAGAGCAATACCTATTGCAAAGAAGTCCAAACTTAAACCCGAAGTGAACAGAACTCAAGACGTTAAAATCGTTAACATCGATCCTGTCACCGTTAAACCCGAAGCAACTAAATCTAAGCGTTCTGTAGACATTAAAAACAACACCGGCTCTAAGAGAAAATATTATTTTGAAACACATAATTCGGATCAACAAAAAGAAATAGTTAAAAATAATTTGGGCAAAAATGTAGATGTTGAAATTGATTGCGTGAAACGAGTTCGTAAAAAGATTGAACATGCGCATATAAACAAAGACGCGGGAAAACCGTATATGTGTGATCTGTGTAACAGATGTTTCACAAAAAAAGACAATTTAAAAACTCACATACGCATCCACCATACATACGACAAGCGCCACGCGTGCAATTACTGCAAAAAAAGATTCACATTCAAAAGTCAATTGGTATATCACACACGCAAACACACCGGTGAGAAACCGTTTGTGTGTCACGTGTGCGAGAAGTGTTTCACCGAAAAGGGCGCTCTTAAATCACACTCACGCACACACACCGGGGGAAAAGCTTACGTTTGTAAAGTTTGCGAAAAGGTGTTCACCACAAAGGAATCCCTGGCAAAGCATGCGGCCGTACACGCCGGGGAACGGGCCTCCGTTTGCCATGTGTGCGGTAAAACATTTAAATTAAAAGGTAACCTCGTAAAACACGTTCGTATACACACGGGTGAGAGGCCTTTCGCTTGCAATGTGTGTAAGAAAGCATTCACCGTCAGAAGTAGTTTAAAGATACACGCCCGAGTGCACACAGGTGAGAAGCCGTATGTGTGTAATGTGTGTGGCAAAGGTTTCACCGTGAAGGATAGGTTAAATTTACACTCACGTACTCATACCGGAGAAAAACCGTACGTATGCAATGTGTGCAACAAGGGTTTCTCTATCAAGGCGGCTCCCATTGCAAACGAGCCCACACTTAACCCCGCAGTGATCCGACCAACACAAGACATGCGTAGAAACGTTACCGCCGCTCCTGTCACCGTTAAAGCTGAGGCGAGCCAATCTAAACGTAATATGGACCTTAAAACCCCGGGTTTTAAAGACAAGAACAAAATTAACCGAACATATTATATTATAAAGTATAATGCGTGCGTCAAAAAAGTTGTTAACACTAGCAATGTGAATTTAAATAAAGATAGTCCAAGGGATTTGTGTACAAAAAGATTTAGTAAAAAGAGTGATTCAACAAAAGCATATGTGTGTGATGTGTGCAAGAAGGGTTTCACACAAAAAGTTAATTTAAGAATACACACACGACAACACACCGGCGAGAAACCGTATGTGTGTCATGTGTGCAAAGCGAGTTTCACTTGTAAACGCAATCTGTCCAATCATCTAACTCGTATACACCACGTCGGTAAAGCGTCATATGTTTGCGATGTTTGTGAGAAAGGATTCACACATCAGTGCCAATTAAGAATACATTTGCGCATTCACACAGGTGAGAAACCGTTTGTGTGCACGTTGTGTGCCAAAGGTTTCACTGAAAACCAAAAGTTAACGAAACACATTCGACGGATACACACAGACGAGAAGCCGTTTGTTTGTCAGATTTGTCAGAAGGGGTTTATTGAGAAGGCGCATTTAAAAACACACCAACGCACACACACAGGGGAAAGGCCTTTTGTTTGCCACGTCTGCGGTAAAAGTTTCAGTGTGAAAGATGCACTAATACAACACAATCGTACACACACAGGTGAGAAACCTTTCGTGTGTATCGAGTGCGATAGGGGTTTCACACAAAAGAGTGCACTGCTGAAGCACTCGCGTATTCACACGGGTGAGAAGCCGTATGTTTGTAATGTGTGCAAGAAAGCCTTCACAGCGAGGAGTAGTTTAATTTTACACACGCGTACACACACAGGTGAGAAGCCGTATGTGTGCAATGTGTGCGATAAAGGTTTTAATGACAAGTATAAGTTGAATGTGCACATGCGAATACACACCGGTGAGAAACCATATGTGTGCAATGTGTGTGGCAAAAAATGCACTGATAAGAGTGCTCTAATCAAACACACGCGTACACACACAGGTGAGAAACCGTATGTGTGCAATGTGTGTGAGAAGGGTTTCACTCAAAAGAGTGCGTTAAACACCCACGCACGTACACACACAACACACAATATTGAGACACAAAACTTTAAGATCATTCCGTAA
Protein Sequence: MENLGICRICLNKDVQHVVKSPQLQDIYEKLTTIPFQADERPLALCYICFAQLKTSHRFMLKCLKAEELLAKMLTNEDGASIIPAHLQSLEGSAEICHFTTTSYCLCDRPESVDSTDSEPDIEQTPSDPGDDIPLCTIKKELETEIELEEEEAEDVEMEEAVNRKRKSQRNTLKRAIPIAKKSKLKPEVNRTQDVKIVNIDPVTVKPEATKSKRSVDIKNNTGSKRKYYFETHNSDQQKEIVKNNLGKNVDVEIDCVKRVRKKIEHAHINKDAGKPYMCDLCNRCFTKKDNLKTHIRIHHTYDKRHACNYCKKRFTFKSQLVYHTRKHTGEKPFVCHVCEKCFTEKGALKSHSRTHTGGKAYVCKVCEKVFTTKESLAKHAAVHAGERASVCHVCGKTFKLKGNLVKHVRIHTGERPFACNVCKKAFTVRSSLKIHARVHTGEKPYVCNVCGKGFTVKDRLNLHSRTHTGEKPYVCNVCNKGFSIKAAPIANEPTLNPAVIRPTQDMRRNVTAAPVTVKAEASQSKRNMDLKTPGFKDKNKINRTYYIIKYNACVKKVVNTSNVNLNKDSPRDLCTKRFSKKSDSTKAYVCDVCKKGFTQKVNLRIHTRQHTGEKPYVCHVCKASFTCKRNLSNHLTRIHHVGKASYVCDVCEKGFTHQCQLRIHLRIHTGEKPFVCTLCAKGFTENQKLTKHIRRIHTDEKPFVCQICQKGFIEKAHLKTHQRTHTGERPFVCHVCGKSFSVKDALIQHNRTHTGEKPFVCIECDRGFTQKSALLKHSRIHTGEKPYVCNVCKKAFTARSSLILHTRTHTGEKPYVCNVCDKGFNDKYKLNVHMRIHTGEKPYVCNVCGKKCTDKSALIKHTRTHTGEKPYVCNVCEKGFTQKSALNTHARTHTTHNIETQNFKIIP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01179658;
90% Identity: -
80% Identity: -