Pari034376.1
Basic Information
- Insect
- Phengaris arion
- Gene Symbol
- PRDM7
- Assembly
- GCA_963565745.1
- Location
- OY751449.1:14403904-14412915[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.00071 15 7.0 0.2 21 43 212 234 202 239 0.85 2 7 0.059 1.3e+03 0.8 0.2 21 42 240 261 235 266 0.77 3 7 0.00073 16 7.0 0.1 21 43 268 290 263 296 0.87 4 7 0.00075 16 6.9 0.2 21 43 296 318 290 323 0.86 5 7 0.00086 19 6.7 0.3 21 43 324 346 318 351 0.86 6 7 0.0056 1.2e+02 4.1 0.2 21 44 352 375 346 385 0.83 7 7 1.3e-05 0.29 12.5 0.5 21 44 409 432 402 436 0.89
Sequence Information
- Coding Sequence
- ATGAGTAAAAAACGACGTATTAACTTGAGGCAAACTCCTCGCGTGAGCTATTATGAACCAGAAGAGCCGAATTTGGATGAATATATTTTCTGTTCCGAATGTGGTGATTATGTTTATGAATATTGCTCAATTCATGGTCCACTGCTTGTGATTCCTGATGATAAGGTACCCAAAAACCCTGATGTTCCATCCTTCATTCCTCATGCAGCCCTCACCATTCCACATGTGTTCCTACATCTCAACTATTCCAGTATTCCAGGAGCCGGTCTAGGTGTCTTCACAACATTAACTCTGCCGCGCGGCGTACGGTTTGGTCCATACAGGGGGAGTAAGAGTGACGAAATCAAGTCTTCATATTGTTGGCAGATCCGGGATGCTAACAATCGGCCATGCCACGTCGTGGACGCTTCAGACCCCAACAACTCCAACTGGATGCGCTACGTCAACTGCTCCAGACATTGGGTCGAGCAGAACCTAGTCGCATACCAGTACAGAGGACAGATATACTACAGAACAATTAAAATTATCCCTCGATTTACTGAGCTAATGGTATTCTACGGGAGCGAGTTTGCATGTGAACTTGGTATAGATCTTAAGAAATACAATTCTCCTAGCACATATGCGCAGAAATTAGGCGAGAAACCGTACACCTGTGATATATGTCAACGTAAATTCTCCCAAAGTAGCAGTTTAGCATACCATAAAAGGACTCATACAGGCGAGAAACCGTACATATGTGATATATGTCAACGTAAATTCTCTCGAAGTAGTCATTTAGCATACCATAAAAGGACTCATACGGGCGAGAAACCGTACACCTGTGATATATGTCAACGTAAATTCTCCCAAAGTAGCAGTTTAGCATACCATAAAAGGACTCATACAGGCGAGAAACCGTACACCTGTGATATATGTCAACGTAAATTCTCCCAAAGTAGCAGTTTAGCATACCATAAAAGGACTCATACAGGCGAGAAACCGTACACCTGTGAAATATGTCAACGTAAATTCTCCCAAAGTAGCAGTTTAGCATACCATAAAAGGACTCATACAGGCGAGAAACCGTACATATGTGATATATGTCAACGTAAATTCTCCCAAAGTAGCAGTTTAGCATACCATAAAAGGACTCATACAGGCGAGAAACCGTACATATGTGATATATTATGTCAACGTAAATTCTCTCGAAGTAGTCATTTAGCATACCATAAAAGGACTCATACGGGCGAGAAACCGTACACCTGTGATATATGTCAACGTAAATTCTCTCATAGTCGTGCTTTACGAAAACATAAGAATACATGTAGGTGTGAAACCATAGTTGCGTGA
- Protein Sequence
- MSKKRRINLRQTPRVSYYEPEEPNLDEYIFCSECGDYVYEYCSIHGPLLVIPDDKVPKNPDVPSFIPHAALTIPHVFLHLNYSSIPGAGLGVFTTLTLPRGVRFGPYRGSKSDEIKSSYCWQIRDANNRPCHVVDASDPNNSNWMRYVNCSRHWVEQNLVAYQYRGQIYYRTIKIIPRFTELMVFYGSEFACELGIDLKKYNSPSTYAQKLGEKPYTCDICQRKFSQSSSLAYHKRTHTGEKPYICDICQRKFSRSSHLAYHKRTHTGEKPYTCDICQRKFSQSSSLAYHKRTHTGEKPYTCDICQRKFSQSSSLAYHKRTHTGEKPYTCEICQRKFSQSSSLAYHKRTHTGEKPYICDICQRKFSQSSSLAYHKRTHTGEKPYICDILCQRKFSRSSHLAYHKRTHTGEKPYTCDICQRKFSHSRALRKHKNTCRCETIVA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -