Basic Information

Insect: Phengaris arion
Gene Symbol: ush
Assembly: GCA_963565745.1
Location: OY751432.1:38864801-38867973[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.002 0.25 13.1 0.3 1 20 119 138 119 140 0.95

2 9 8.8e-05 0.011 17.3 0.9 1 23 177 199 177 199 0.98

3 9 0.034 4.3 9.2 0.7 3 20 230 247 229 249 0.93

4 9 0.27 34 6.4 1.3 2 21 487 506 486 507 0.90

5 9 0.012 1.5 10.7 0.3 3 20 536 553 534 555 0.90

6 9 4.3 5.4e+02 2.6 0.0 2 23 582 603 581 603 0.93

7 9 0.0039 0.49 12.2 1.2 1 23 609 631 609 631 0.99

8 9 0.15 19 7.2 0.7 1 23 667 690 667 690 0.96

9 9 0.43 54 5.7 1.0 3 20 720 737 719 738 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.002	0.25	13.1	0.3	1	20	119	138	119	140	0.95
2	9	8.8e-05	0.011	17.3	0.9	1	23	177	199	177	199	0.98
3	9	0.034	4.3	9.2	0.7	3	20	230	247	229	249	0.93
4	9	0.27	34	6.4	1.3	2	21	487	506	486	507	0.90
5	9	0.012	1.5	10.7	0.3	3	20	536	553	534	555	0.90
6	9	4.3	5.4e+02	2.6	0.0	2	23	582	603	581	603	0.93
7	9	0.0039	0.49	12.2	1.2	1	23	609	631	609	631	0.99
8	9	0.15	19	7.2	0.7	1	23	667	690	667	690	0.96
9	9	0.43	54	5.7	1.0	3	20	720	737	719	738	0.93

Sequence Information

Coding Sequence: ATGTTGACAGACAGGCATCTCTGGACAGgTGAAGACGAGGAATGGGGAAACGAGAGCGAGGCGATGCCGGGAGAACCTCGCACGCCGAGCTCGGGCGGAGAGCGCGCGGCGTCCAGCGGGGACGCGTCACCGACCTCGGAGGGCTCGGCGACCAACTCGCCCCCGCGGCTGAGGCTCAATGCGAGCCTGGCCACCGATCCCGCGCTCGCGCCGCGCGCCACGTCGCTTGCGTCGCTGAAGCATGAGCCCCCCTCGCCTTCGCCGCCGCCCCCGCCGGTGCAGCCGGTCAATTACATGGGTTTAACGGCCGCGAATTTCCCGTCTCTATTTCCGGCGGCGGTGACGCCCACCGGATATAAGTGTAATCCGTGCGGCATCCGGTATTCATCGCTGAGTACCCTCCAAGCTCACCAGGAGCACTACTGTTCTAAAAGAAGAACGAAACCGGACGGTACGGATGCCACGGTCGATGCTACGGCCGATGAATCTAGCGGAGACTCGAAGACTCCCAAGCCGCTCGGAAAACAATACGCTTGTACTTACTGTTCCTATAGCGCCGATAAAAAAGTCAGTCTCAATAGGCATATGCGCATGCACTCGTCGTCTCCCGTGAGCAGCGGCACGCCGGGTCCGATGCCCACGTCGAACGGAGACACCGCCGACGGCCCTCCGGCGCAGGACCGGTACTGTGTGGATTGTGATATACACTTTAGCTCCCTAAAAACTTTTCGTGCTCATAAAGATTATTACTGTAATACGAGGCAAGTGGTGAAACAAGCACTGGCCGCCGCGCGGGCGAGTTCGGCCACGTCCGGCTCGGCGCCGCCTTCTCCGGGAGCCACTCCTCCAGCTCAAAATCAGTTAGCCCTAGCTCTACCTACGAACCCAATTCTAATAGTGCCGTATTCAATTCTACGGAGTGCAAGCACGCTTCCCGGCACGACGCTACCGGATCCAGAGACGCCCTGCTTTCTACTACCGAATGGTACATTCCAGCCCATAAGCCGAGCATTGCCAAATATTAATACGGAAATCAAGGAGCCCGAAGTTCTAAAATCTGCGAATCGGTGTAGAGAGCCACCTCGAGACGGATCCACTCCACTAGATCTGAGCGTGCGGCGGACACCCGAGTCGGTAACCATCGACGAACACGAAAAAGAAAACAGGCTGCGATCCGCAACCCCCGAGCAGATCGTGTGCGCGCCGTCACTGCCCGGATCCCCGGGCACCCCCTCGCCGTCGCGGCGGTCCTCGTCGCCCAGCGGGGAATCGTCACCGAAGAGACGTCGACGAAACTCGAGGGACCCAACTCCGAAACCCATGAGCGTATCTCCGCACGAAGAGAAATACACCCCGTCGGTCACTCCGACCCTACCGTCGGCGTTAGCGCTCCGACTGGCTACAGAACTGCCGGTGACCGTGGCGTCGCCGCAGGTTCTGGTCAAGCAAGGCGTGTCCAAGTGCATAGAGTGCAATATAGTGTTCTGCAAGTACGAGAACTATCGCGTCCACAAGCGGAACTACTGCTCGGCCGGGCGGGGCGAGGAGCGGGCGAGCCCCGCGCCGCCCGAGCCCGGGCCGCCGCCGCAGTACCGGCAGCTCATCTGCCTGGCGTGCGGCATCCACTTCAGCTCGTTCGACAACCTGACGACGCACCAGTCGTACTACTGCACGAAGCGGGAGACGCGGTCGCCGCGCACGGCGGAGGCGCCGCGGCCGGCGTCGGCGACGGAGGGCGGCTGGAAGTGCCCGTGCTGCGAGGTGGTGTCGCccacggcggcggcggcgcagcgCCACATGGAGGCGCACGCCGGCGTCAAGGCGTTCCGCTGCACCATCTGCCAGTACCGCGGCAACACGCTGCGGGGCATGCGCACGCACATCCGCATGCACTTCCGCGAGAAGCCCGCCGACCTACAGGAGGAGAGCTACATCTCGTGCGTGGTTGAGGAGTCTGCACCTGAAAGCGATGTTGCACCTGCACCGGGGGAGCGGGTGCACCGCTGCGGCACCTGCGCCTACACCTCCACCTACCGCGGCAACGTCGTGCGGCACGCGCGGCTGGTGCACGCGGCAGAAGACGAGGAACGCACCTCCCCCGCTCCGCCACCGGATATAAAGAAAGAACCGGAACCAGACGAGGACACGCCCAACTTTTGCAAGTCCTGCAACATATCCTTCAAATACGTGAAGACGTATAAAGCGCACAAGGAGTTCTACTGCAACGCCGCGAGACAGGACGCTGCGGCTAATAATAACGAGCCACGGGACGCGCCCGCGCCTGTGGTGTGA
Protein Sequence: MLTDRHLWTGEDEEWGNESEAMPGEPRTPSSGGERAASSGDASPTSEGSATNSPPRLRLNASLATDPALAPRATSLASLKHEPPSPSPPPPPVQPVNYMGLTAANFPSLFPAAVTPTGYKCNPCGIRYSSLSTLQAHQEHYCSKRRTKPDGTDATVDATADESSGDSKTPKPLGKQYACTYCSYSADKKVSLNRHMRMHSSSPVSSGTPGPMPTSNGDTADGPPAQDRYCVDCDIHFSSLKTFRAHKDYYCNTRQVVKQALAAARASSATSGSAPPSPGATPPAQNQLALALPTNPILIVPYSILRSASTLPGTTLPDPETPCFLLPNGTFQPISRALPNINTEIKEPEVLKSANRCREPPRDGSTPLDLSVRRTPESVTIDEHEKENRLRSATPEQIVCAPSLPGSPGTPSPSRRSSSPSGESSPKRRRRNSRDPTPKPMSVSPHEEKYTPSVTPTLPSALALRLATELPVTVASPQVLVKQGVSKCIECNIVFCKYENYRVHKRNYCSAGRGEERASPAPPEPGPPPQYRQLICLACGIHFSSFDNLTTHQSYYCTKRETRSPRTAEAPRPASATEGGWKCPCCEVVSPTAAAAQRHMEAHAGVKAFRCTICQYRGNTLRGMRTHIRMHFREKPADLQEESYISCVVEESAPESDVAPAPGERVHRCGTCAYTSTYRGNVVRHARLVHAAEDEERTSPAPPPDIKKEPEPDEDTPNFCKSCNISFKYVKTYKAHKEFYCNAARQDAAANNNEPRDAPAPVV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00935260;
90% Identity: iTF_01217910;
80% Identity: -