Pobe039891.2
Basic Information
- Insect
- Phasia obesa
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_949628195.1
- Location
- OX451218.1:132953825-132970379[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2 5.7e+04 -9.6 11.5 88 88 72 72 16 158 0.49 2 4 0.16 4.5e+03 -1.7 1.9 32 91 206 267 193 279 0.47 3 4 2.1e-116 5.9e-112 375.5 27.9 1 299 340 636 340 637 0.94 4 4 0.14 4e+03 -1.6 3.7 220 245 665 690 640 711 0.47
Sequence Information
- Coding Sequence
- ATGGATACTACAAGTGCCGTAGGTCGGCGTCGAGTAAATTCGCGTATCAATGCTGAGGATCAAGCTTTGGATCAAATAGCAAAAGAGcatgcGACGAACCCTACTAAtgtcaacaataaaaatacgcaaaacaaaaacaactctAGCAGCAGCACCAGCAGCAAgagcaacaaaaataacaacaacaaccaagTCGAAGCGGCAAACGATGAAATCATCGAAGAGTTGTTTGATTTTAGCGATACTGATTTAAAAGAACTCGGCGAAACAAACCAAGAAGAAATTAGCAACGACATTAACTCTACTGTTAGCGCTGAGCTTTCAAACGAAGTCAGCAGTAACTTAAAGGAAAAGAAGGAAGTTGATAAAGATGTAGAggtaaaatttggaaatatgACTAGCGATAATAAcaataatcataataataaagTAGAATCTATagaacaacaagaacaacaacatgTGGGAACGCTGTTATCGTCGCCCATTGATAAGATTGATAAAGAAAACTATGATAACAAATCAAATGACAATAATGAATTATTAGtaatgacaacaacaacaacaacaaatataattaatgAAGAAGAAAAAGTAGTTGCAATCGAATGTGACTATAATAAGCAAAAACAAGTGCCATGCAAATCAGAAAAATGCGAAGAAAAAGAAACTACAAAAGATGACATGTTGTCCAACACAACCACAACTACTGCTATTCCCGTACAAATCTCCAATAGTTCTATTGTTGTCGGCGACAATTCAATGAGCTGTGAGACAAGTAACAATGACATGAGAAAGTCAACATCTTCAGACATAAAGTCTATGAAAACAACTAAACCTTCAGAGTCGTCGTGTGTAAATGGACTGAATGAAGATAGTAACTGCAAGAAAATTGACAACAATGAACCCAACCATAGTAATAACGACGATAATAATGATGGtgaggatgatgatgatgattatgCCGAACCAGATGATGAACTTTTAGTGCAGTTCCTTGATGAGGCCAATCAGATTGCTGAGGCTAGATTAGCCGCTAGAAGGCATGCTAGAGCGGAAGCTCGAGAAATACGTATGCGAGAATTGGAACGCCAGCAAAAAGAACAAGAATCCAATGCAGATCGTGTGTTTGATATGCATTCAACGGTAACTGGAATCACACCACTCTCACACATGCGTCTGGGCTTAGGAACATCACCTGTTACGGGTTTACTAAACTCAACAAGAGGGAATTCCATGTCTTCGAGACGCAGCAGTGAAGATTCCCTAGAAGAGGAAGGCCGCAGTTTAAGGGATATACGTCATGAACTTAAAgatGTCGAAGAACGGTTTCGCAAAGCTATGATAGCGAATGCTCAGTTGGATAATGATCGTGCCTCACAAACGTATCAAATACAGTTGCTAAAAGACAAACTGGAAGATATGGAAGAATCATATTCACAATTACAGCGTGAATGTAAGGAAAAGACACGAGATTGTAATGCCTTGAAAAGATCGTTGGATAAACTTAGCGAAGAGCTTAAACTTATACAGGGTCAGCTAAATGAGCGTGATACTCTGATAGCAGAACAAGGTTTAGTTATTGTGGCAATTGAAAATGAGGATGGCACTGATGCCAAACGTGCTCTAGTCAGTGTTGAAAATGCACAATTATTGGGTTCGGTGCAAGGATCATTAGATGTTCGACTTAAGAAATTCAGCGAAGAGAAACAGCAACTGCAGTCTGAAGTCCAACAATTGCAGGAACAATTAGAATCTTATAAAAGTCAGGGTAAAGGGCGAGGTAAAGCCAATATTTCAAATGGTCCCTTAGCTTCAGACGATGATGATTATGAAGCTCAAAGAGAAGCTAATAAAATCATATcggattataaatataaattacaaaaagctGAACAGGAAATCGCTAGTCTTCAATCAAGTTTAGCTCGTTCCGAAACACAAGTTATACGTTATAAAAGTACAGCGGAAGCTGCCGAAAAAGCTGAAGCCGAactgaaaattgaaagaagGAAATTGCAAAGAGAGAACCGAGAAGCAATGGAAAAGCTTGAGGAGTTAGAAACATCAAATAATCATCTTCTGAAACGTTTGGACAAATTAAAGAATGCCAAAAGTGCTTTACTAAAAGATCTCTGA
- Protein Sequence
- MDTTSAVGRRRVNSRINAEDQALDQIAKEHATNPTNVNNKNTQNKNNSSSSTSSKSNKNNNNNQVEAANDEIIEELFDFSDTDLKELGETNQEEISNDINSTVSAELSNEVSSNLKEKKEVDKDVEVKFGNMTSDNNNNHNNKVESIEQQEQQHVGTLLSSPIDKIDKENYDNKSNDNNELLVMTTTTTTNIINEEEKVVAIECDYNKQKQVPCKSEKCEEKETTKDDMLSNTTTTTAIPVQISNSSIVVGDNSMSCETSNNDMRKSTSSDIKSMKTTKPSESSCVNGLNEDSNCKKIDNNEPNHSNNDDNNDGEDDDDDYAEPDDELLVQFLDEANQIAEARLAARRHARAEAREIRMRELERQQKEQESNADRVFDMHSTVTGITPLSHMRLGLGTSPVTGLLNSTRGNSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNDRASQTYQIQLLKDKLEDMEESYSQLQRECKEKTRDCNALKRSLDKLSEELKLIQGQLNERDTLIAEQGLVIVAIENEDGTDAKRALVSVENAQLLGSVQGSLDVRLKKFSEEKQQLQSEVQQLQEQLESYKSQGKGRGKANISNGPLASDDDDYEAQREANKIISDYKYKLQKAEQEIASLQSSLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMEKLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -